Literature DB >> 16489231

Population genetics of translational robustness.

Claus O Wilke1, D Allan Drummond.   

Abstract

Recent work has shown that expression level is the main predictor of a gene's evolutionary rate and that more highly expressed genes evolve slower. A possible explanation for this observation is selection for proteins that fold properly despite mistranslation, in short selection for translational robustness. Translational robustness leads to the somewhat paradoxical prediction that highly expressed genes are extremely tolerant to missense substitutions but nevertheless evolve very slowly. Here, we study a simple theoretical model of translational robustness that allows us to gain analytic insight into how this paradoxical behavior arises.

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Year:  2006        PMID: 16489231      PMCID: PMC1461446          DOI: 10.1534/genetics.105.051300

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  33 in total

1.  Highly expressed genes in yeast evolve slowly.

Authors:  C Pál; B Papp; L D Hurst
Journal:  Genetics       Date:  2001-06       Impact factor: 4.562

2.  Protein dispensability and rate of evolution.

Authors:  A E Hirsh; H B Fraser
Journal:  Nature       Date:  2001-06-28       Impact factor: 49.962

3.  Synonymous codon usage, accuracy of translation, and gene length in Caenorhabditis elegans.

Authors:  G Marais; L Duret
Journal:  J Mol Evol       Date:  2001-03       Impact factor: 2.395

Review 4.  Why are phenotypic mutation rates much higher than genotypic mutation rates?

Authors:  Reinhard Bürger; Martin Willensdorfer; Martin A Nowak
Journal:  Genetics       Date:  2005-09-02       Impact factor: 4.562

5.  Thermodynamic prediction of protein neutrality.

Authors:  Jesse D Bloom; Jonathan J Silberg; Claus O Wilke; D Allan Drummond; Christoph Adami; Frances H Arnold
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-11       Impact factor: 11.205

6.  Missense misreading of asparagine codons as a function of codon identity and context.

Authors:  J Precup; J Parker
Journal:  J Biol Chem       Date:  1987-08-15       Impact factor: 5.157

7.  Do essential genes evolve slowly?

Authors:  L D Hurst; N G Smith
Journal:  Curr Biol       Date:  1999-07-15       Impact factor: 10.834

8.  An accuracy center in the ribosome conserved over 2 billion years.

Authors:  L E Alksne; R A Anthony; S W Liebman; J R Warner
Journal:  Proc Natl Acad Sci U S A       Date:  1993-10-15       Impact factor: 11.205

9.  Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy.

Authors:  H Akashi
Journal:  Genetics       Date:  1994-03       Impact factor: 4.562

10.  Comparative analysis of the Saccharomyces cerevisiae and Caenorhabditis elegans protein interaction networks.

Authors:  Ino Agrafioti; Jonathan Swire; James Abbott; Derek Huntley; Sarah Butcher; Michael P H Stumpf
Journal:  BMC Evol Biol       Date:  2005-03-18       Impact factor: 3.260

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  34 in total

1.  Mistranslation drives the evolution of robustness in TEM-1 β-lactamase.

Authors:  Sinisa Bratulic; Florian Gerber; Andreas Wagner
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-21       Impact factor: 11.205

Review 2.  Selection on protein structure, interaction, and sequence.

Authors:  Peter B Chi; David A Liberles
Journal:  Protein Sci       Date:  2016-02-11       Impact factor: 6.725

3.  Neutral evolution of robustness in Drosophila microRNA precursors.

Authors:  Nicholas Price; Reed A Cartwright; Niv Sabath; Dan Graur; Ricardo B R Azevedo
Journal:  Mol Biol Evol       Date:  2011-01-31       Impact factor: 16.240

4.  Universal distribution of protein evolution rates as a consequence of protein folding physics.

Authors:  Alexander E Lobkovsky; Yuri I Wolf; Eugene V Koonin
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-26       Impact factor: 11.205

5.  Protein Melting Temperature Cannot Fully Assess Whether Protein Folding Free Energy Underlies the Universal Abundance-Evolutionary Rate Correlation Seen in Proteins.

Authors:  Rostam M Razban
Journal:  Mol Biol Evol       Date:  2019-09-01       Impact factor: 16.240

6.  Secreted Proteins Defy the Expression Level-Evolutionary Rate Anticorrelation.

Authors:  Felix Feyertag; Patricia M Berninsone; David Alvarez-Ponce
Journal:  Mol Biol Evol       Date:  2017-03-01       Impact factor: 16.240

7.  Accelerated simulation of evolutionary trajectories in origin-fixation models.

Authors:  Ashley I Teufel; Claus O Wilke
Journal:  J R Soc Interface       Date:  2017-02       Impact factor: 4.118

Review 8.  Three independent determinants of protein evolutionary rate.

Authors:  Sun Shim Choi; Sridhar Hannenhalli
Journal:  J Mol Evol       Date:  2013-02-12       Impact factor: 2.395

9.  Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution.

Authors:  D Allan Drummond; Claus O Wilke
Journal:  Cell       Date:  2008-07-25       Impact factor: 41.582

10.  Relative contributions of intrinsic structural-functional constraints and translation rate to the evolution of protein-coding genes.

Authors:  Yuri I Wolf; Irina V Gopich; David J Lipman; Eugene V Koonin
Journal:  Genome Biol Evol       Date:  2010-07-12       Impact factor: 3.416

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