Literature DB >> 16488772

Automatic detection of unstained viable cells in bright field images using a support vector machine with an improved training procedure.

Xi Long1, W Louis Cleveland, Y Lawrence Yao.   

Abstract

Detection of unstained viable cells in bright field images is an inherently difficult task due to the immense variability of cell appearance. Traditionally, it has required human observers. However, in high-throughput robotic systems, an automatic procedure is essential. In this paper, we formulate viable cell detection as a supervised, binary pattern recognition problem and show that a support vector machine (SVM) with an improved training algorithm provides highly effective cell identification. In the case of cell detection, the binary classification problem generates two classes, one of which is much larger than the other. In addition, the total number of samples is extremely large. This combination represents a difficult problem for SVMs. We solved this problem with an iterative training procedure ("Compensatory Iterative Sample Selection", CISS). This procedure, which was systematically studied under various class size ratios and overlap conditions, was found to outperform several commonly used methods, primarily owing to its ability to choose the most representative samples for the decision boundary. Its speed and accuracy are sufficient for use in a practical system.

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Year:  2006        PMID: 16488772     DOI: 10.1016/j.compbiomed.2004.12.002

Source DB:  PubMed          Journal:  Comput Biol Med        ISSN: 0010-4825            Impact factor:   4.589


  6 in total

1.  Using the low-pass monogenic signal framework for cell/background classification on multiple cell lines in bright-field microscope images.

Authors:  Firas Mualla; Simon Schöll; Björn Sommerfeldt; Andreas Maier; Stefan Steidl; Rainer Buchholz; Joachim Hornegger
Journal:  Int J Comput Assist Radiol Surg       Date:  2013-12-11       Impact factor: 2.924

2.  Automated identification of neurons and their locations.

Authors:  A Inglis; L Cruz; D L Roe; H E Stanley; D L Rosene; B Urbanc
Journal:  J Microsc       Date:  2008-06       Impact factor: 1.758

3.  Unbiased estimation of cell number using the automatic optical fractionator.

Authors:  Peter R Mouton; Hady Ahmady Phoulady; Dmitry Goldgof; Lawrence O Hall; Marcia Gordon; David Morgan
Journal:  J Chem Neuroanat       Date:  2016-12-14       Impact factor: 3.052

4.  Multiclass detection of cells in multicontrast composite images.

Authors:  Xi Long; W Louis Cleveland; Y Lawrence Yao
Journal:  Comput Biol Med       Date:  2009-12-22       Impact factor: 4.589

5.  Classification of Mycobacterium tuberculosis in images of ZN-stained sputum smears.

Authors:  Rethabile Khutlang; Sriram Krishnan; Ronald Dendere; Andrew Whitelaw; Konstantinos Veropoulos; Genevieve Learmonth; Tania S Douglas
Journal:  IEEE Trans Inf Technol Biomed       Date:  2009-09-01

6.  A machine vision system for automated non-invasive assessment of cell viability via dark field microscopy, wavelet feature selection and classification.

Authors:  Ning Wei; Erwin Flaschel; Karl Friehs; Tim Wilhelm Nattkemper
Journal:  BMC Bioinformatics       Date:  2008-10-21       Impact factor: 3.169

  6 in total

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