Literature DB >> 16486209

Monte Carlo basin paving: an improved global optimization method.

Lixin Zhan1, Jeff Z Y Chen, Wing-Ki Liu.   

Abstract

We propose a global optimization procedure, basin paving, which is based on the combination of the optimization strategies behind basin hopping and energy landscape paving. As an example, we describe its application in the protein structure prediction by examining two well-studied peptides, where we have found lower potential energy minima than previously located. We also compare the statistics of the searching trajectories produced by basin paving, basin hopping, and energy landscape paving.

Year:  2006        PMID: 16486209     DOI: 10.1103/PhysRevE.73.015701

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  3 in total

1.  Determination of low-energy structures of a small RNA hairpin using Monte Carlo-based techniques.

Authors:  Sudhanshu Shanker; Pradipta Bandyopadhyay
Journal:  J Biosci       Date:  2012-07       Impact factor: 1.826

2.  Conformational study of Met-enkephalin based on the ECEPP force fields.

Authors:  Lixin Zhan; Jeff Z Y Chen; Wing-Ki Liu
Journal:  Biophys J       Date:  2006-07-07       Impact factor: 4.033

3.  Monte Carlo simulations of tBid association with the mitochondrial outer membrane.

Authors:  Valery G Veresov; Alexander I Davidovskii
Journal:  Eur Biophys J       Date:  2007-03-21       Impact factor: 1.733

  3 in total

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