Literature DB >> 16483781

Mass spectrometry of RNA.

Benjamin Thomas1, Alexandre V Akoulitchev.   

Abstract

A complex population of non-coding RNAs is present in higher organisms. These RNAs have a multitude of functions and execute control over gene expression through various, often poorly understood, mechanisms. At present, the identification and analysis of functional regulatory RNAs and disparate ribonucleoprotein complexes remain an experimental challenge for biologists. They require specially designed approaches and techniques in genomics and RNA biochemistry. Developments in technologies based on mass spectrometry could offer sensitive and efficient solutions to analysis of the sequence, structure, modification and composition of RNA.

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Year:  2006        PMID: 16483781     DOI: 10.1016/j.tibs.2006.01.004

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  14 in total

1.  2D-HELS MS Seq: A General LC-MS-Based Method for Direct and de novo Sequencing of RNA Mixtures with Different Nucleotide Modifications.

Authors:  Ning Zhang; Shundi Shi; Barney Yoo; Xiaohong Yuan; Wenjia Li; Shenglong Zhang
Journal:  J Vis Exp       Date:  2020-07-10       Impact factor: 1.355

2.  Top-down tandem mass spectrometry of tRNA via ion trap collision-induced dissociation.

Authors:  Teng-Yi Huang; Jian Liu; Scott A McLuckey
Journal:  J Am Soc Mass Spectrom       Date:  2009-12-28       Impact factor: 3.109

3.  Direct Sequencing of tRNA by 2D-HELS-AA MS Seq Reveals Its Different Isoforms and Dynamic Base Modifications.

Authors:  Ning Zhang; Shundi Shi; Xuanting Wang; Wenhao Ni; Xiaohong Yuan; Jiachen Duan; Tony Z Jia; Barney Yoo; Ashley Ziegler; James J Russo; Wenjia Li; Shenglong Zhang
Journal:  ACS Chem Biol       Date:  2020-05-19       Impact factor: 5.100

4.  Characterization and Sequence Mapping of Large RNA and mRNA Therapeutics Using Mass Spectrometry.

Authors:  Christina J Vanhinsbergh; Angela Criscuolo; Jennifer N Sutton; Keeley Murphy; Andrew J K Williamson; Ken Cook; Mark J Dickman
Journal:  Anal Chem       Date:  2022-05-12       Impact factor: 8.008

5.  Matrix-assisted laser desorption/ionization mass spectrometry screening for pseudouridine in mixtures of small RNAs by chemical derivatization, RNase digestion and signature products.

Authors:  Anita Durairaj; Patrick A Limbach
Journal:  Rapid Commun Mass Spectrom       Date:  2008-12       Impact factor: 2.419

6.  Purification and characterisation of dsRNA using ion pair reverse phase chromatography and mass spectrometry.

Authors:  Alison O Nwokeoji; An-Wen Kung; Peter M Kilby; David E Portwood; Mark J Dickman
Journal:  J Chromatogr A       Date:  2016-12-21       Impact factor: 4.759

7.  High resolution fingerprinting of single and double-stranded RNA using ion-pair reverse-phase chromatography.

Authors:  Alison O Nwokeoji; Mark E Earll; Peter M Kilby; David E Portwood; Mark J Dickman
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2018-11-28       Impact factor: 3.205

8.  Ariadne: a database search engine for identification and chemical analysis of RNA using tandem mass spectrometry data.

Authors:  Hiroshi Nakayama; Misaki Akiyama; Masato Taoka; Yoshio Yamauchi; Yuko Nobe; Hideaki Ishikawa; Nobuhiro Takahashi; Toshiaki Isobe
Journal:  Nucleic Acids Res       Date:  2009-03-06       Impact factor: 16.971

Review 9.  Target-Directed Approaches for Screening Small Molecules against RNA Targets.

Authors:  Hafeez S Haniff; Laurent Knerr; Jonathan L Chen; Matthew D Disney; Helen L Lightfoot
Journal:  SLAS Discov       Date:  2020-05-18       Impact factor: 3.341

10.  A Quasi-direct LC-MS/MS-based Targeted Proteomics Approach for miRNA Quantification via a Covalently Immobilized DNA-peptide Probe.

Authors:  Liang Liu; Qingqing Xu; Shuai Hao; Yun Chen
Journal:  Sci Rep       Date:  2017-07-18       Impact factor: 4.379

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