Literature DB >> 16481621

Agrobacterium tumefaciens VirB8 structure reveals potential protein-protein interaction sites.

Susan Bailey1, Doyle Ward, Rebecca Middleton, J Gunter Grossmann, Patricia C Zambryski.   

Abstract

Bacterial type IV secretion systems (T4SS) translocate DNA and/or proteins to recipient cells, thus providing a mechanism for conjugative transfer of genetic material and bacterial pathogenesis. Here we describe the first structure of a core component from the archetypal Agrobacterium tumefaciens T4SS: the 2.2-A resolution crystal structure of the VirB8 periplasmic domain (pVirB8(AT)). VirB8 forms a dimer in the crystal, and we identify residues likely important for stabilization of the dimer interface. Structural comparison of pVirB8(AT) with Brucella suis VirB8 confirms that the monomers have a similar fold. In addition, the pVirB8(AT) dimer superimposes very closely on the B. suis VirB8 dimer, supporting the proposal that dimer formation in the crystal reflects self-interactions that are biologically significant. The evolutionary conservation level for each residue was obtained from a data set of 84 VirB8 homologs and projected onto the protein structure to indicate conserved surface patches that likely contact other T4SS proteins.

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Year:  2006        PMID: 16481621      PMCID: PMC1413848          DOI: 10.1073/pnas.0511216103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  28 in total

1.  The N-terminal extension of rusticyanin is not responsible for its acid stability.

Authors:  J Günter Grossmann; John F Hall; Lalji D Kanbi; S Samar Hasnain
Journal:  Biochemistry       Date:  2002-03-19       Impact factor: 3.162

Review 2.  Show me the substrates: modulation of host cell function by type IV secretion systems.

Authors:  Hiroki Nagai; Craig R Roy
Journal:  Cell Microbiol       Date:  2003-06       Impact factor: 3.715

3.  ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information.

Authors:  Fabian Glaser; Tal Pupko; Inbal Paz; Rachel E Bell; Dalit Bechor-Shental; Eric Martz; Nir Ben-Tal
Journal:  Bioinformatics       Date:  2003-01       Impact factor: 6.937

4.  Definition of a bacterial type IV secretion pathway for a DNA substrate.

Authors:  Eric Cascales; Peter J Christie
Journal:  Science       Date:  2004-05-21       Impact factor: 47.728

5.  Identification of the VirB4-VirB8-VirB5-VirB2 pilus assembly sequence of type IV secretion systems.

Authors:  Qing Yuan; Anna Carle; Chan Gao; Durga Sivanesan; Khaled Ahmed Aly; Christoph Höppner; Lilian Krall; Natalie Domke; Christian Baron
Journal:  J Biol Chem       Date:  2005-05-18       Impact factor: 5.157

6.  Functional analysis of the Agrobacterium tumefaciens T-DNA transport pore protein VirB8.

Authors:  R B Kumar; A Das
Journal:  J Bacteriol       Date:  2001-06       Impact factor: 3.490

7.  Spatial location and requirements for the assembly of the Agrobacterium tumefaciens type IV secretion apparatus.

Authors:  Paul K Judd; Renu B Kumar; Anath Das
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-02       Impact factor: 11.205

8.  Peptide linkage mapping of the Agrobacterium tumefaciens vir-encoded type IV secretion system reveals protein subassemblies.

Authors:  Doyle V Ward; Olga Draper; John R Zupan; Patricia C Zambryski
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-12       Impact factor: 11.205

9.  Crystal structure of a tetradecameric assembly of the association domain of Ca2+/calmodulin-dependent kinase II.

Authors:  André Hoelz; Angus C Nairn; John Kuriyan
Journal:  Mol Cell       Date:  2003-05       Impact factor: 17.970

10.  ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures.

Authors:  Meytal Landau; Itay Mayrose; Yossi Rosenberg; Fabian Glaser; Eric Martz; Tal Pupko; Nir Ben-Tal
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

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  32 in total

Review 1.  Surface organelles assembled by secretion systems of Gram-negative bacteria: diversity in structure and function.

Authors:  David G Thanassi; James B Bliska; Peter J Christie
Journal:  FEMS Microbiol Rev       Date:  2012-05-24       Impact factor: 16.408

2.  The small heat-shock protein HspL is a VirB8 chaperone promoting type IV secretion-mediated DNA transfer.

Authors:  Yun-Long Tsai; Yin-Ru Chiang; Franz Narberhaus; Christian Baron; Erh-Min Lai
Journal:  J Biol Chem       Date:  2010-04-28       Impact factor: 5.157

3.  An orphaned Mce-associated membrane protein of Mycobacterium tuberculosis is a virulence factor that stabilizes Mce transporters.

Authors:  Ellen Foot Perkowski; Brittany K Miller; Jessica R McCann; Jonathan Tabb Sullivan; Seidu Malik; Irving Coy Allen; Virginia Godfrey; Jennifer D Hayden; Miriam Braunstein
Journal:  Mol Microbiol       Date:  2016-02-05       Impact factor: 3.501

Review 4.  Mechanism and structure of the bacterial type IV secretion systems.

Authors:  Peter J Christie; Neal Whitaker; Christian González-Rivera
Journal:  Biochim Biophys Acta       Date:  2014-01-02

5.  Structural Analysis and Inhibition of TraE from the pKM101 Type IV Secretion System.

Authors:  Bastien Casu; Jonathan Smart; Mark A Hancock; Mark Smith; Jurgen Sygusch; Christian Baron
Journal:  J Biol Chem       Date:  2016-09-15       Impact factor: 5.157

Review 6.  Biological diversity of prokaryotic type IV secretion systems.

Authors:  Cristina E Alvarez-Martinez; Peter J Christie
Journal:  Microbiol Mol Biol Rev       Date:  2009-12       Impact factor: 11.056

Review 7.  The Mosaic Type IV Secretion Systems.

Authors:  Peter J Christie
Journal:  EcoSal Plus       Date:  2016-10

8.  Isolation of bacterial type IV machine subassemblies.

Authors:  Mayukh K Sarkar; Seyyed I Husnain; Simon J Jakubowski; Peter J Christie
Journal:  Methods Mol Biol       Date:  2013

9.  Dimerization and interactions of Brucella suis VirB8 with VirB4 and VirB10 are required for its biological activity.

Authors:  Athanasios Paschos; Gilles Patey; Durga Sivanesan; Chan Gao; Richard Bayliss; Gabriel Waksman; David O'callaghan; Christian Baron
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-28       Impact factor: 11.205

10.  An anomalous type IV secretion system in Rickettsia is evolutionarily conserved.

Authors:  Joseph J Gillespie; Nicole C Ammerman; Sheila M Dreher-Lesnick; M Sayeedur Rahman; Micah J Worley; Joao C Setubal; Bruno S Sobral; Abdu F Azad
Journal:  PLoS One       Date:  2009-03-12       Impact factor: 3.240

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