Literature DB >> 16473909

Dissimilar kinetic behavior of electrically manipulated single- and double-stranded DNA tethered to a gold surface.

Ulrich Rant1, Kenji Arinaga, Marc Tornow, Yong Woon Kim, Roland R Netz, Shozo Fujita, Naoki Yokoyama, Gerhard Abstreiter.   

Abstract

We report on the electrical manipulation of single- and double-stranded oligodeoxynucleotides that are end tethered to gold surfaces in electrolyte solution. The response to alternating repulsive and attractive electric surface fields is studied by time-resolved fluorescence measurements, revealing markedly distinct dynamics for the flexible single-stranded and stiff double-stranded DNA, respectively. Hydrodynamic simulations rationalize this finding and disclose two different kinetic mechanisms: stiff polymers undergo rotation around the anchoring pivot point; flexible polymers, on the other hand, are pulled onto the attracting surface segment by segment.

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Year:  2006        PMID: 16473909      PMCID: PMC1440747          DOI: 10.1529/biophysj.105.078857

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  9 in total

1.  DNA computing on surfaces.

Authors:  Q Liu; L Wang; A G Frutos; A E Condon; R M Corn; L M Smith
Journal:  Nature       Date:  2000-01-13       Impact factor: 49.962

2.  An electrical probe of protein-DNA interactions on DNA-modified surfaces.

Authors:  Elizabeth M Boon; Julia E Salas; Jacqueline K Barton
Journal:  Nat Biotechnol       Date:  2002-03       Impact factor: 54.908

Review 3.  DNA microarray technology: devices, systems, and applications.

Authors:  Michael J Heller
Journal:  Annu Rev Biomed Eng       Date:  2002-03-22       Impact factor: 9.590

Review 4.  Ten years of tension: single-molecule DNA mechanics.

Authors:  Carlos Bustamante; Zev Bryant; Steven B Smith
Journal:  Nature       Date:  2003-01-23       Impact factor: 49.962

Review 5.  DNA in a material world.

Authors:  Nadrian C Seeman
Journal:  Nature       Date:  2003-01-23       Impact factor: 49.962

6.  Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads.

Authors:  S B Smith; L Finzi; C Bustamante
Journal:  Science       Date:  1992-11-13       Impact factor: 47.728

7.  Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules.

Authors:  S B Smith; Y Cui; C Bustamante
Journal:  Science       Date:  1996-02-09       Impact factor: 47.728

8.  Structural properties of oligonucleotide monolayers on gold surfaces probed by fluorescence investigations.

Authors:  Ulrich Rant; Kenji Arinaga; Shozo Fujita; Naoki Yokoyama; Gerhard Abstreiter; Marc Tornow
Journal:  Langmuir       Date:  2004-11-09       Impact factor: 3.882

9.  Electrochemical quantitation of DNA immobilized on gold.

Authors:  A B Steel; T M Herne; M J Tarlov
Journal:  Anal Chem       Date:  1998-11-15       Impact factor: 6.986

  9 in total
  7 in total

1.  Switchable DNA interfaces for the highly sensitive detection of label-free DNA targets.

Authors:  Ulrich Rant; Kenji Arinaga; Simon Scherer; Erika Pringsheim; Shozo Fujita; Naoki Yokoyama; Marc Tornow; Gerhard Abstreiter
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-19       Impact factor: 11.205

2.  BIOPHYSICAL PROPERTIES OF NUCLEIC ACIDS AT SURFACES RELEVANT TO MICROARRAY PERFORMANCE.

Authors:  Archana N Rao; David W Grainger
Journal:  Biomater Sci       Date:  2014-04-01       Impact factor: 6.843

3.  Electrical potential-assisted DNA-RNA hybridization for rapid microRNA extraction.

Authors:  Xiaoli Zhao; Yong Li; Ritong Sun; Yaofang Fan; Xiaofeng Mu; Ye Wang; Chao Shi; Cuiping Ma
Journal:  Anal Bioanal Chem       Date:  2022-03-01       Impact factor: 4.478

4.  Development of Electrochemical DNA Biosensor for Equine Hindgut Acidosis Detection.

Authors:  Joshua Davies; Carol Thomas; Mohammad Rizwan; Christopher Gwenin
Journal:  Sensors (Basel)       Date:  2021-03-26       Impact factor: 3.576

5.  Electrochemical detection of low-copy number salivary RNA based on specific signal amplification with a hairpin probe.

Authors:  Fang Wei; Jianghua Wang; Wei Liao; Bernhard G Zimmermann; David T Wong; Chih-Ming Ho
Journal:  Nucleic Acids Res       Date:  2008-05-17       Impact factor: 16.971

Review 6.  Electrically Responsive Surfaces: Experimental and Theoretical Investigations.

Authors:  Eleonora Cantini; Xingyong Wang; Patrick Koelsch; Jon A Preece; Jing Ma; Paula M Mendes
Journal:  Acc Chem Res       Date:  2016-06-07       Impact factor: 22.384

7.  Conformational Changes of Immobilized Polythymine due to External Stressors Studied with Temperature-Controlled Electrochemical Microdevices.

Authors:  Ramya Vishnubhotla; Christopher B Montgomery; Kristen L Steffens; Steve Semancik
Journal:  Langmuir       Date:  2021-02-17       Impact factor: 4.331

  7 in total

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