Literature DB >> 16469316

Functional and evolutionary analyses on expressed intronless genes in the mouse genome.

Kishore Ramaji Sakharkar1, Meena Kishore Sakharkar, Cymbeline T Culiat, Vincent T K Chow, Shazib Pervaiz.   

Abstract

Using computational approaches we have identified 2017 expressed intronless genes in the mouse genome. Evolutionary analysis reveals that 56 intronless genes are conserved among the three domains of life--bacteria, archea and eukaryotes. These highly conserved intronless genes were found to be involved in essential housekeeping functions. About 80% of expressed mouse intronless genes have orthologs in eukaryotic genomes only, and thus are specific to eukaryotic organisms. 608 of these genes have intronless human orthologs and 302 of these orthologs have a match in OMIM database. Investigation into these mouse genes will be important in generating mouse models for understanding human diseases.

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Year:  2006        PMID: 16469316     DOI: 10.1016/j.febslet.2006.01.070

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  13 in total

1.  Genome-wide analysis of intronless genes in rice and Arabidopsis.

Authors:  Mukesh Jain; Paramjit Khurana; Akhilesh K Tyagi; Jitendra P Khurana
Journal:  Funct Integr Genomics       Date:  2007-06-20       Impact factor: 3.410

2.  Conditionals by inversion provide a universal method for the generation of conditional alleles.

Authors:  Aris N Economides; David Frendewey; Peter Yang; Melissa G Dominguez; Anthony T Dore; Ivan B Lobov; Trikaldarshi Persaud; Jose Rojas; Joyce McClain; Peter Lengyel; Gustavo Droguett; Rostislav Chernomorsky; Sean Stevens; Wojtek Auerbach; Thomas M Dechiara; William Pouyemirou; Joseph M Cruz; Kieran Feeley; Ian A Mellis; Jason Yasenchack; Sarah J Hatsell; Liqin Xie; Esther Latres; Lily Huang; Yuhong Zhang; Evangelos Pefanis; Dimitris Skokos; Ron A Deckelbaum; Susan D Croll; Samuel Davis; David M Valenzuela; Nicholas W Gale; Andrew J Murphy; George D Yancopoulos
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-05       Impact factor: 11.205

3.  Processed pseudogenes: the 'fossilized footprints' of past gene expression.

Authors:  Ondrej Podlaha; Jianzhi Zhang
Journal:  Trends Genet       Date:  2009-09-30       Impact factor: 11.639

4.  Application of a novel strategy of engineering conditional alleles to a single exon gene, Sox2.

Authors:  Nikolaos Mandalos; Marannia Saridaki; Jessica Lea Harper; Anastasia Kotsoni; Peter Yang; Aris N Economides; Eumorphia Remboutsika
Journal:  PLoS One       Date:  2012-09-27       Impact factor: 3.240

5.  The roles and evolutionary patterns of intronless genes in deuterostomes.

Authors:  Ming Zou; Baocheng Guo; Shunping He
Journal:  Comp Funct Genomics       Date:  2011-08-11

6.  PIGD: a database for intronless genes in the Poaceae.

Authors:  Hanwei Yan; Cuiping Jiang; Xiaoyu Li; Lei Sheng; Qing Dong; Xiaojian Peng; Qian Li; Yang Zhao; Haiyang Jiang; Beijiu Cheng
Journal:  BMC Genomics       Date:  2014-10-01       Impact factor: 3.969

7.  SinEx DB: a database for single exon coding sequences in mammalian genomes.

Authors:  Roddy Jorquera; Rodrigo Ortiz; F Ossandon; Juan Pablo Cárdenas; Rene Sepúlveda; Carolina González; David S Holmes
Journal:  Database (Oxford)       Date:  2016-06-07       Impact factor: 3.451

8.  Genome-wide analysis of European sea bass provides insights into the evolution and functions of single-exon genes.

Authors:  Mbaye Tine; Heiner Kuhl; Peter R Teske; Richard Reinhardt
Journal:  Ecol Evol       Date:  2021-04-02       Impact factor: 2.912

9.  Genome-wide identification, characterization, and expression analysis of lineage-specific genes within zebrafish.

Authors:  Liandong Yang; Ming Zou; Beide Fu; Shunping He
Journal:  BMC Genomics       Date:  2013-01-31       Impact factor: 3.969

Review 10.  Pervasiveness of intronless genes expressed in haploid germ cell differentiation.

Authors:  Hiromitsu Tanaka; Akira Tsujimura
Journal:  Reprod Med Biol       Date:  2021-05-04
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