Literature DB >> 16467913

Nanomedicine and protein misfolding diseases.

Alexey V Kransnoslobodtsev1, Luda S Shlyakhtenko, Egor Ukraintsev, Tatiana O Zaikova, John F W Keana, Yuri L Lyubchenko.   

Abstract

Misfolding and self assembly of proteins in nano-aggregates of different sizes and morphologies (nano-ensembles, primarily nanofilaments and nano-rings) is a complex phenomenon that can be facilitated, impeded, or prevented, by interactions with various intracellular metabolites, intracellular nanomachines controlling protein folding and interactions with other proteins. A fundamental understanding of molecular processes leading to misfolding and self-aggregation of proteins involved in various neurodegenerative diseases will provide critical information to help identify appropriate therapeutic routes to control these processes. An elevated propensity of misfolded protein conformation in solution to aggregate with the formation of various morphologies impedes the use of traditional physical chemical approaches for studies of misfolded conformations of proteins. In our recent alternative approach, the protein molecules were tethered to surfaces to prevent aggregation and AFM force spectroscopy was used to probe the interaction between protein molecules depending on their conformations. It was shown that formation of filamentous aggregates is facilitated at pH values corresponding to the maximum of rupture forces. In this paper, a novel surface chemistry was developed for anchoring of amyloid beta (Abeta) peptides at their N-terminal moieties. The use of the site specific immobilization procedure allowed to measure the rupture of Abeta-Abeta contacts at single molecule level. The rupture of these contacts is accompanied by the extension of the peptide chain detected by a characteristic elasto-mechanical component of the force-distance curves. Potential applications of the nanomechanical studies to understanding the mechanisms of development of protein misfolding diseases are discussed.

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Year:  2005        PMID: 16467913      PMCID: PMC1351038          DOI: 10.1016/j.nano.2005.10.005

Source DB:  PubMed          Journal:  Nanomedicine        ISSN: 1549-9634            Impact factor:   5.307


  20 in total

1.  Dynamic force spectroscopy of single DNA molecules.

Authors:  T Strunz; K Oroszlan; R Schäfer; H J Güntherodt
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

2.  Association of partially-folded intermediates of staphylococcal nuclease induces structure and stability.

Authors:  V N Uversky; A S Karnoup; R Khurana; D J Segel; S Doniach; A L Fink
Journal:  Protein Sci       Date:  1999-01       Impact factor: 6.725

Review 3.  Atomic force microscopy: a powerful tool to observe biomolecules at work.

Authors:  A Engel; Y Lyubchenko; D Müller
Journal:  Trends Cell Biol       Date:  1999-02       Impact factor: 20.808

4.  Constraints on supramolecular structure in amyloid fibrils from two-dimensional solid-state NMR spectroscopy with uniform isotopic labeling.

Authors:  Robert Tycko; Yoshitaka Ishii
Journal:  J Am Chem Soc       Date:  2003-06-04       Impact factor: 15.419

Review 5.  Protein folding and misfolding.

Authors:  Christopher M Dobson
Journal:  Nature       Date:  2003-12-18       Impact factor: 49.962

6.  Protein interactions and misfolding analyzed by AFM force spectroscopy.

Authors:  Chad McAllister; Mikhail A Karymov; Yoshiko Kawano; Alexander Y Lushnikov; Andrew Mikheikin; Vladimir N Uversky; Yuri L Lyubchenko
Journal:  J Mol Biol       Date:  2005-11-02       Impact factor: 5.469

7.  Structural biology: prying into prions.

Authors:  Christopher M Dobson
Journal:  Nature       Date:  2005-06-09       Impact factor: 49.962

8.  Insights into the amyloid folding problem from solid-state NMR.

Authors:  Robert Tycko
Journal:  Biochemistry       Date:  2003-03-25       Impact factor: 3.162

Review 9.  Protein aggregation: folding aggregates, inclusion bodies and amyloid.

Authors:  A L Fink
Journal:  Fold Des       Date:  1998

10.  Reversible unfolding of individual titin immunoglobulin domains by AFM.

Authors:  M Rief; M Gautel; F Oesterhelt; J M Fernandez; H E Gaub
Journal:  Science       Date:  1997-05-16       Impact factor: 47.728

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  21 in total

Review 1.  Nanoimaging for prion related diseases.

Authors:  Alexey V Krasnoslobodtsev; Alexander M Portillo; Tanja Deckert-Gaudig; Volker Deckert; Yuri L Lyubchenko
Journal:  Prion       Date:  2010-10-23       Impact factor: 3.931

2.  Probing Interactions within the synaptic DNA-SfiI complex by AFM force spectroscopy.

Authors:  Alexey V Krasnoslobodtsev; Luda S Shlyakhtenko; Yuri L Lyubchenko
Journal:  J Mol Biol       Date:  2006-10-17       Impact factor: 5.469

3.  Dynamics of synaptic SfiI-DNA complex: single-molecule fluorescence analysis.

Authors:  Mikhail A Karymov; Alexey V Krasnoslobodtsev; Yuri L Lyubchenko
Journal:  Biophys J       Date:  2007-02-02       Impact factor: 4.033

Review 4.  Nanotools for megaproblems: probing protein misfolding diseases using nanomedicine modus operandi.

Authors:  Vladimir N Uversky; Alexander V Kabanov; Yuri L Lyubchenko
Journal:  J Proteome Res       Date:  2006-10       Impact factor: 4.466

5.  Early stages for Parkinson's development: alpha-synuclein misfolding and aggregation.

Authors:  Junping Yu; Yuri L Lyubchenko
Journal:  J Neuroimmune Pharmacol       Date:  2008-07-17       Impact factor: 4.147

6.  A flexible nanoarray approach for the assembly and probing of molecular complexes.

Authors:  Alexey V Krasnoslobodtsev; Yuliang Zhang; Ekaterina Viazovkina; Alexander Gall; Chad Bertagni; Yuri L Lyubchenko
Journal:  Biophys J       Date:  2015-05-05       Impact factor: 4.033

7.  Novel polymer linkers for single molecule AFM force spectroscopy.

Authors:  Zenghan Tong; Andrey Mikheikin; Alexey Krasnoslobodtsev; Zhengjian Lv; Yuri L Lyubchenko
Journal:  Methods       Date:  2013-04-23       Impact factor: 3.608

8.  Visualization of DNA and protein-DNA complexes with atomic force microscopy.

Authors:  Yuri L Lyubchenko; Alexander A Gall; Luda S Shlyakhtenko
Journal:  Methods Mol Biol       Date:  2014

9.  Mica functionalization for imaging of DNA and protein-DNA complexes with atomic force microscopy.

Authors:  Luda S Shlyakhtenko; Alexander A Gall; Yuri L Lyubchenko
Journal:  Methods Mol Biol       Date:  2013

10.  The role of intrinsically unstructured proteins in neurodegenerative diseases.

Authors:  Swasti Raychaudhuri; Sucharita Dey; Nitai P Bhattacharyya; Debashis Mukhopadhyay
Journal:  PLoS One       Date:  2009-05-15       Impact factor: 3.240

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