Literature DB >> 16464091

Application of Badger's rule to heme and non-heme iron-oxygen bonds: an examination of ferryl protonation states.

Michael T Green1.   

Abstract

To gain insight into the protonation state of enzymatic ferryl species we have examined the applicability of Badger's rule to heme and non-heme iron-oxygen bonds. Using density functional theory we have calculated r(e) and nu(e) for the Fe-O bonds of complexes with different axial ligands, iron-oxidation, oxygen-protonation, and spin states. Our results indicate that Badger's rule holds for heme and non-heme oxo and hydroxo complexes. We find that the long Fe-O bonds that have been reported in the crystal structures of the ferryl forms of myoglobin, horseradish peroxidase, cytochrome c peroxidase, and catalase deviate substantially from the values predicted by Badger's rule, while the short Fe-O bonds obtained from X-ray absorption measurements are in good agreement with Badger's rule. In light of our analysis we conclude that the ferryl forms of myoglobin, horseradish peroxidase, and cytochrome c peroxidase are authentic iron(IV)oxos with Fe-O bonds on the order of 1.66 A and pKa's < 4.

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Year:  2006        PMID: 16464091     DOI: 10.1021/ja054074s

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  57 in total

1.  One-electron oxidation of an oxoiron(IV) complex to form an [O═FeV═NR]+ center.

Authors:  Katherine M Van Heuvelen; Adam T Fiedler; Xiaopeng Shan; Raymond F De Hont; Katlyn K Meier; Emile L Bominaar; Eckard Münck; Lawrence Que
Journal:  Proc Natl Acad Sci U S A       Date:  2012-07-11       Impact factor: 11.205

2.  High-Resolution Extended X-ray Absorption Fine Structure Analysis Provides Evidence for a Longer Fe···Fe Distance in the Q Intermediate of Methane Monooxygenase.

Authors:  George E Cutsail; Rahul Banerjee; Ang Zhou; Lawrence Que; John D Lipscomb; Serena DeBeer
Journal:  J Am Chem Soc       Date:  2018-11-16       Impact factor: 15.419

3.  Ferryl haem protonation gates peroxidatic reactivity in globins.

Authors:  Radu Silaghi-Dumitrescu; Brandon J Reeder; Peter Nicholls; Chris E Cooper; Michael T Wilson
Journal:  Biochem J       Date:  2007-05-01       Impact factor: 3.857

4.  Axial ligand tuning of a nonheme iron(IV)-oxo unit for hydrogen atom abstraction.

Authors:  Chivukula V Sastri; Jimin Lee; Kyungeun Oh; Yoon Jin Lee; Junghyun Lee; Timothy A Jackson; Kallol Ray; Hajime Hirao; Woonsup Shin; Jason A Halfen; Jinheung Kim; Lawrence Que; Sason Shaik; Wonwoo Nam
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-28       Impact factor: 11.205

5.  Trans-dioxo manganese(V) porphyrins.

Authors:  Ning Jin; Mohammed Ibrahim; Thomas G Spiro; John T Groves
Journal:  J Am Chem Soc       Date:  2007-09-21       Impact factor: 15.419

6.  A C-C bonded phenoxyl radical dimer with a zero bond dissociation free energy.

Authors:  Jessica M Wittman; Rebecca Hayoun; Werner Kaminsky; Michael K Coggins; James M Mayer
Journal:  J Am Chem Soc       Date:  2013-08-23       Impact factor: 15.419

7.  Ligand structural effects on Cu2S2 bonding and reactivity in side-on disulfido-bridged dicopper complexes.

Authors:  Eric C Brown; Itsik Bar-Nahum; John T York; Nermeen W Aboelella; William B Tolman
Journal:  Inorg Chem       Date:  2007-01-22       Impact factor: 5.165

8.  X-ray structures of catalytic intermediates of cytochrome c oxidase provide insights into its O2 activation and unidirectional proton-pump mechanisms.

Authors:  Atsuhiro Shimada; Yuki Etoh; Rika Kitoh-Fujisawa; Ai Sasaki; Kyoko Shinzawa-Itoh; Takeshi Hiromoto; Eiki Yamashita; Kazumasa Muramoto; Tomitake Tsukihara; Shinya Yoshikawa
Journal:  J Biol Chem       Date:  2020-03-12       Impact factor: 5.157

9.  Probing Hydrogen Bonding Interactions to Iron-Oxido/Hydroxido Units by 57 Fe Nuclear Resonance Vibrational Spectroscopy.

Authors:  Andrew C Weitz; Ethan A Hill; Victoria F Oswald; Emile L Bominaar; Andrew S Borovik; Michael P Hendrich; Yisong Guo
Journal:  Angew Chem Int Ed Engl       Date:  2018-11-14       Impact factor: 15.336

10.  Copper incorporation into recombinant CotA laccase from Bacillus subtilis: characterization of fully copper loaded enzymes.

Authors:  Paulo Durão; Zhenjia Chen; André T Fernandes; Peter Hildebrandt; Daniel H Murgida; Smilja Todorovic; Manuela M Pereira; Eduardo P Melo; Lígia O Martins
Journal:  J Biol Inorg Chem       Date:  2007-10-24       Impact factor: 3.358

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