Literature DB >> 16455665

A model for C74 addition by CCA-adding enzymes: C74 addition, like C75 and A76 addition, does not involve tRNA translocation.

Hyundae D Cho1, Yu Chen, Gabriele Varani, Alan M Weiner.   

Abstract

The CCA-adding enzyme adds CCA to the 3'-end of tRNA one nucleotide at a time, using CTP and ATP as substrates. We found previously that tRNA does not rotate or translocate on the enzyme during the addition of C75 and A76. We therefore predicted that the growing 3'-end of tRNA must, upon addition of each nucleotide, refold to reposition the new 3'-hydroxyl equivalently relative to the solitary nucleotidyltransferase motif. Cocrystal structures of the class I archaeal Archaeoglobus fulgidus enzyme, poised for addition of C75 and A76, confirmed this prediction. We have also demonstrated that an evolutionarily flexible beta-turn facilitates progressive refolding of the 3'-terminal C74 and C75 residues during C75 and A76 addition. Although useful cocrystals corresponding to C74 addition have not yet been obtained, we now show experimentally that tRNA does not rotate or translocate during C74 addition. We therefore propose, based on the existing A. fulgidus cocrystal structures, that the same flexible beta-turn functions as a wedge between the discriminator base (N73) and the terminal base pair of the acceptor stem, unstacking and repositioning N73 to attack the incoming CTP. Thus a single flexible beta-turn would orchestrate consecutive addition of all three nucleotides without significant movement of the tRNA on the enzyme surface.

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Year:  2006        PMID: 16455665     DOI: 10.1074/jbc.M512603200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  8 in total

Review 1.  RNA-specific ribonucleotidyl transferases.

Authors:  Georges Martin; Walter Keller
Journal:  RNA       Date:  2007-09-13       Impact factor: 4.942

2.  Reengineering CCA-adding enzymes to function as (U,G)- or dCdCdA-adding enzymes or poly(C,A) and poly(U,G) polymerases.

Authors:  Hyundae D Cho; Christophe L M J Verlinde; Alan M Weiner
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-19       Impact factor: 11.205

3.  On the role of a conserved, potentially helix-breaking residue in the tRNA-binding alpha-helix of archaeal CCA-adding enzymes.

Authors:  Hyundae D Cho; Vanita D Sood; David Baker; Alan M Weiner
Journal:  RNA       Date:  2008-05-21       Impact factor: 4.942

4.  tRNA integrity is a prerequisite for rapid CCA addition: implication for quality control.

Authors:  Marcel Dupasquier; Sangbumn Kim; Konstantine Halkidis; Howard Gamper; Ya-Ming Hou
Journal:  J Mol Biol       Date:  2008-04-08       Impact factor: 5.469

Review 5.  tRNA nucleotidyltransferases: ancient catalysts with an unusual mechanism of polymerization.

Authors:  Heike Betat; Christiane Rammelt; Mario Mörl
Journal:  Cell Mol Life Sci       Date:  2010-02-14       Impact factor: 9.261

6.  Mechanism for the definition of elongation and termination by the class II CCA-adding enzyme.

Authors:  Yukimatsu Toh; Daijiro Takeshita; Tomoyuki Numata; Shuya Fukai; Osamu Nureki; Kozo Tomita
Journal:  EMBO J       Date:  2009-09-10       Impact factor: 11.598

7.  How the CCA-adding enzyme selects adenine over cytosine at position 76 of tRNA.

Authors:  Baocheng Pan; Yong Xiong; Thomas A Steitz
Journal:  Science       Date:  2010-11-12       Impact factor: 47.728

Review 8.  Molecular mechanisms of template-independent RNA polymerization by tRNA nucleotidyltransferases.

Authors:  Kozo Tomita; Seisuke Yamashita
Journal:  Front Genet       Date:  2014-02-17       Impact factor: 4.599

  8 in total

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