Literature DB >> 16443663

Solutes modify a conformational transition in a membrane transport protein.

Miyeon Kim1, Qi Xu, Gail E Fanucci, David S Cafiso.   

Abstract

The bacterial outer-membrane vitamin B(12) transporter, BtuB, undergoes a dramatic order-to-disorder transition in its N-terminal energy-coupling motif (Ton box) upon substrate binding. Here, site-directed spin labeling (SDSL) is used to show that a range of solutes prevents this conformational change when ligand is bound to BtuB, resulting in a more ordered Ton box structure. For each solute examined, the data indicate that solutes effectively block this conformational transition through an osmotic mechanism. The molecular weight dependence of this solute effect has been examined for a series of polyethylene glycols, and a sharp molecular weight cutoff is observed. This cutoff indicates that solutes are preferentially excluded from a cavity within the protein as well as the protein surface. Furthermore, the sensitivity of the conformational change to solution osmolality is consistent with a structural model predicted by SDSL. When the Ton box is unfolded by detergents or mutations (rather than by ligand binding), solutes, such as polyethylene glycols and salts, also induce a more structured compacted conformation. These results suggest that conformational changes in this class of outer membrane transporters, which involve modest energy differences and changes in hydration, may be modulated by a range of solutes, including solutes typically used in protein crystallization.

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Year:  2006        PMID: 16443663      PMCID: PMC1414566          DOI: 10.1529/biophysj.105.078246

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  30 in total

1.  Site-directed disulfide bonding reveals an interaction site between energy-coupling protein TonB and BtuB, the outer membrane cobalamin transporter.

Authors:  N Cadieux; R J Kadner
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-14       Impact factor: 11.205

2.  Substrate-induced exposure of an energy-coupling motif of a membrane transporter.

Authors:  H J Merianos; N Cadieux; C H Lin; R J Kadner; D S Cafiso
Journal:  Nat Struct Biol       Date:  2000-03

3.  Osmotic stress, crowding, preferential hydration, and binding: A comparison of perspectives.

Authors:  V A Parsegian; R P Rand; D C Rau
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

Review 4.  Identifying conformational changes with site-directed spin labeling.

Authors:  W L Hubbell; D S Cafiso; C Altenbach
Journal:  Nat Struct Biol       Date:  2000-09

Review 5.  Protein hydration, thermodynamic binding, and preferential hydration.

Authors:  Serge N Timasheff
Journal:  Biochemistry       Date:  2002-11-19       Impact factor: 3.162

6.  Sequence changes in the ton box region of BtuB affect its transport activities and interaction with TonB protein.

Authors:  N Cadieux; C Bradbeer; R J Kadner
Journal:  J Bacteriol       Date:  2000-11       Impact factor: 3.490

Review 7.  Acquisition of siderophores in gram-negative bacteria.

Authors:  José D Faraldo-Gómez; Mark S P Sansom
Journal:  Nat Rev Mol Cell Biol       Date:  2003-02       Impact factor: 94.444

8.  Transport-defective mutations alter the conformation of the energy-coupling motif of an outer membrane transporter.

Authors:  K A Coggshall; N Cadieux; C Piedmont; R J Kadner; D S Cafiso
Journal:  Biochemistry       Date:  2001-11-20       Impact factor: 3.162

9.  Substrate-induced conformational changes of the periplasmic N-terminus of an outer-membrane transporter by site-directed spin labeling.

Authors:  Gail E Fanucci; Kelly A Coggshall; Nathalie Cadieux; Miyeon Kim; Robert J Kadner; David S Cafiso
Journal:  Biochemistry       Date:  2003-02-18       Impact factor: 3.162

10.  Structure and dynamics of the beta-barrel of the membrane transporter BtuB by site-directed spin labeling.

Authors:  Gail E Fanucci; Nathalie Cadieux; Christie A Piedmont; Robert J Kadner; David S Cafiso
Journal:  Biochemistry       Date:  2002-10-01       Impact factor: 3.162

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  20 in total

1.  Conformational exchange in a membrane transport protein is altered in protein crystals.

Authors:  Daniel M Freed; Peter S Horanyi; Michael C Wiener; David S Cafiso
Journal:  Biophys J       Date:  2010-09-08       Impact factor: 4.033

2.  Spin labeling and Double Electron-Electron Resonance (DEER) to Deconstruct Conformational Ensembles of HIV Protease.

Authors:  Thomas M Casey; Gail E Fanucci
Journal:  Methods Enzymol       Date:  2015-09-01       Impact factor: 1.600

3.  Substrate-dependent transmembrane signaling in TonB-dependent transporters is not conserved.

Authors:  Miyeon Kim; Gail E Fanucci; David S Cafiso
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-02       Impact factor: 11.205

4.  Sequence of late molecular events in the activation of rhodopsin.

Authors:  Bernhard Knierim; Klaus Peter Hofmann; Oliver P Ernst; Wayne L Hubbell
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-11       Impact factor: 11.205

5.  Osmolyte perturbation reveals conformational equilibria in spin-labeled proteins.

Authors:  Carlos J López; Mark R Fleissner; Zhefeng Guo; Ana K Kusnetzow; Wayne L Hubbell
Journal:  Protein Sci       Date:  2009-08       Impact factor: 6.725

6.  Gating at both ends and breathing in the middle: conformational dynamics of TolC.

Authors:  Loredana Vaccaro; Kathryn A Scott; Mark S P Sansom
Journal:  Biophys J       Date:  2008-10-03       Impact factor: 4.033

7.  Induced conformational changes in the activation of the Pseudomonas aeruginosa type III toxin, ExoU.

Authors:  Marc A Benson; Steven M Komas; Katherine M Schmalzer; Monika S Casey; Dara W Frank; Jimmy B Feix
Journal:  Biophys J       Date:  2011-03-02       Impact factor: 4.033

8.  Effect of osmolytes on the binding of EGR1 transcription factor to DNA.

Authors:  David C Mikles; Vikas Bhat; Brett J Schuchardt; Caleb B McDonald; Amjad Farooq
Journal:  Biopolymers       Date:  2015-02       Impact factor: 2.505

9.  Structural and dynamical changes in an alpha-subunit of a heterotrimeric G protein along the activation pathway.

Authors:  Ned Van Eps; William M Oldham; Heidi E Hamm; Wayne L Hubbell
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-19       Impact factor: 11.205

10.  Osmolytes modulate conformational exchange in solvent-exposed regions of membrane proteins.

Authors:  Ricardo H Flores Jiménez; Marie-Ange Do Cao; Miyeon Kim; David S Cafiso
Journal:  Protein Sci       Date:  2010-02       Impact factor: 6.725

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