Literature DB >> 16433528

NMR analysis of aromatic interactions in designed peptide beta-hairpins.

Radhakrishnan Mahalakshmi1, Srinivasarao Raghothama, Padmanabhan Balaram.   

Abstract

Designed octapeptide beta-hairpins containing a central (D)Pro-Gly segment have been used as a scaffold to place the aromatic residues Tyr and Trp at various positions on the antiparallel beta-strands. Using a set of five peptide hairpins, aromatic interactions have been probed across antiparallel beta-sheets, in the non-hydrogen bonding position (Ac-L-Y-V-(D)P-G-L-Y/W-V-OMe: peptides 1 and 2), diagonally across the strands (Boc-Y/W-L-V-(D)P-G-W-L-V-OMe: peptides 3 and 6), and along the strands at positions i and i + 2 (Boc-L-L-V-(D)P-G-Y-L-W-OMe: peptide 4). Two peptides served as controls (Boc-L-L-V-(D)P-G-Y-W-V-OMe: peptide 5; Boc-L-Y-V-(D)P-G-L-L-V-OMe: peptide 7) for aromatic interactions. All studies have been carried out using solution NMR methods in CDCl(3) + 10% DMSO-d(6) and have been additionally examined in CD(3)OH for peptides 1 and 2. Inter-ring proton-proton nuclear Overhauser effects (NOEs) and upfield shifted aromatic proton resonances have provided firm evidence for specific aromatic interactions. Calculated NMR structures for peptides 1 and 2, containing aromatic pairs at facing non-hydrogen bonded positions, revealed that T-shaped arrangements of the interacting pairs of rings are favored, with ring current effects leading to extremely upfield chemical shifts and temperature dependences for specific aromatic protons. Anomalous far-UV CD spectra appeared to be a characteristic feature in peptides where the two aromatic residues are spatially proximal. The observation of the close approach of aromatic rings in organic solvents suggests that interactions of an electrostatic nature may be favored. This situation may be compared to the case of aqueous solutions, where clustering of aromatic residues is driven by solvophobic (hydrophobic) forces.

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Year:  2006        PMID: 16433528     DOI: 10.1021/ja054040k

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  11 in total

1.  Conformationally constrained peptides from CD2 to modulate protein-protein interactions between CD2 and CD58.

Authors:  Ameya Gokhale; Thomas K Weldeghiorghis; Veena Taneja; Seetharama D Satyanarayanajois
Journal:  J Med Chem       Date:  2011-07-14       Impact factor: 7.446

2.  Structure-Property Relationship Study of N-(Hydroxy)Peptides for the Design of Self-Assembled Parallel β-Sheets.

Authors:  Alexis D Richaud; Stéphane P Roche
Journal:  J Org Chem       Date:  2020-09-17       Impact factor: 4.354

3.  Cyclic modular beta-sheets.

Authors:  R Jeremy Woods; Justin O Brower; Elena Castellanos; Mehrnoosh Hashemzadeh; Omid Khakshoor; Wade A Russu; James S Nowick
Journal:  J Am Chem Soc       Date:  2007-02-13       Impact factor: 15.419

4.  An artificial beta-sheet that dimerizes through parallel beta-sheet interactions.

Authors:  Sergiy Levin; James S Nowick
Journal:  J Am Chem Soc       Date:  2007-10-06       Impact factor: 15.419

5.  Probing the lower size limit for protein-like fold stability: ten-residue microproteins with specific, rigid structures in water.

Authors:  Brandon L Kier; Niels H Andersen
Journal:  J Am Chem Soc       Date:  2008-10-09       Impact factor: 15.419

6.  The Role of Aromatic-Aromatic Interactions in Strand-Strand Stabilization of β-Sheets.

Authors:  Ivan L Budyak; Anastasia Zhuravleva; Lila M Gierasch
Journal:  J Mol Biol       Date:  2013-06-28       Impact factor: 5.469

7.  Very short peptides with stable folds: building on the interrelationship of Trp/Trp, Trp/cation, and Trp/backbone-amide interaction geometries.

Authors:  Lisa Eidenschink; Brandon L Kier; Kelly N L Huggins; Niels H Andersen
Journal:  Proteins       Date:  2009-05-01

Review 8.  Structure-Based Design of Inhibitors of Protein-Protein Interactions: Mimicking Peptide Binding Epitopes.

Authors:  Marta Pelay-Gimeno; Adrian Glas; Oliver Koch; Tom N Grossmann
Journal:  Angew Chem Int Ed Engl       Date:  2015-06-26       Impact factor: 15.336

9.  Engineering β-sheets employing N-methylated heterochiral amino acids.

Authors:  Dipan Ghosh; Priyanka Lahiri; Hitesh Verma; Somnath Mukherjee; Jayanta Chatterjee
Journal:  Chem Sci       Date:  2016-04-21       Impact factor: 9.825

10.  A Two-Tailed Phosphopeptide Crystallizes to Form a Lamellar Structure.

Authors:  Michal Pellach; Sudipta Mondal; Karl Harlos; Deni Mance; Marc Baldus; Ehud Gazit; Linda J W Shimon
Journal:  Angew Chem Int Ed Engl       Date:  2017-02-13       Impact factor: 15.336

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