Literature DB >> 16429610

Exploring surfaces and cavities in lipoxygenase and other proteins by hyperpolarized xenon-129 NMR.

C R Bowers1, V Storhaug, C E Webster, J Bharatam, A Cottone, R Gianna, K Betsey, B J Gaffney.   

Abstract

This paper presents an exploratory study of the binding interactions of xenon with the surface of several different proteins in the solution and solid states using both conventional and hyperpolarized (129)Xe NMR. The generation of hyperpolarized (129)Xe by spin exchange optical pumping affords an enhancement by 3-4 orders of magnitude of its NMR signal. As a result, it is possible to observe Xe directly bound to the surface of micromolar quantities of lyophilized protein. The highly sensitive nature of the (129)Xe line shape and chemical shift are used as indicators for the conditions most likely to yield maximal dipolar contact between (129)Xe nuclei and nuclear spins situated on the protein. This is an intermediate step toward achieving the ultimate goal of NMR enhancement of the binding-site nuclei by polarization transfer from hyperpolarized (129)Xe. The hyperpolarized (129)Xe spectra resulting from exposure of four different proteins in the lyophilized, powdered form have been examined for evidence of binding. Each of the proteins, namely, metmyoglobin, methemoglobin, hen egg white lysozyme, and soybean lipoxygenase, yielded a distinctly different NMR line shape. With the exception of lysozyme, the proteins all possess a paramagnetic iron center which can be expected to rapidly relax the (129)Xe and produce a net shift in its resonance position if the noble gas atom occupies specific binding sites near the iron. At temperatures from 223 to 183 K, NMR signals were observed in the 0-40 ppm chemical shift range, relative to Xe in the gas phase. The signals broadened and shifted downfield as the temperature was reduced, indicating that Xe is exchanging between the gas phase and internal or external binding sites of the proteins. Additionally, conventional (129)Xe NMR studies of metmyoglobin and lipoxygenase in the solution state are presented. The temperature dependence of the chemical shift and line shape indicate exchange of Xe between adsorption sites on lipoxygenase and Xe in the solvent on the slow to intermediate exchange time scale. The NMR results are compared with N(2), Xe, and CH(4) gas adsorption isotherms. It is found that lipoxygenase is unique among the proteins studied in possessing a relatively high affinity for gas molecules, and in addition, demonstrating the most clearly resolved adsorbed (129)Xe NMR peak in the lyophilized state.

Entities:  

Year:  1999        PMID: 16429610      PMCID: PMC1317562          DOI: 10.1021/ja991443+

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  26 in total

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Journal:  Phys Rev A Gen Phys       Date:  1985-01

2.  Rb-129Xe spin-exchange rates due to binary and three-body collisions at high Xe pressures.

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Journal:  Phys Rev A       Date:  1992-04-01       Impact factor: 3.140

3.  The structure of mammalian 15-lipoxygenase reveals similarity to the lipases and the determinants of substrate specificity.

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Journal:  Biochemistry       Date:  1984-06-19       Impact factor: 3.162

8.  Binding of xenon to sperm whale myoglobin.

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Journal:  Nature       Date:  1965-07-03       Impact factor: 49.962

9.  Crystal structure of soybean lipoxygenase L-1 at 1.4 A resolution.

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Journal:  Biochemistry       Date:  1996-08-20       Impact factor: 3.162

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  13 in total

1.  Magnetization transfer from laser-polarized xenon to protons located in the hydrophobic cavity of the wheat nonspecific lipid transfer protein.

Authors:  C Landon; P Berthault; F Vovelle; H Desvaux
Journal:  Protein Sci       Date:  2001-04       Impact factor: 6.725

2.  Evidence of nonspecific surface interactions between laser-polarized xenon and myoglobin in solution.

Authors:  S M Rubin; M M Spence; B M Goodson; D E Wemmer; A Pines
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4.  Distinguishing multiple chemotaxis Y protein conformations with laser-polarized 129Xe NMR.

Authors:  Thomas J Lowery; Michaeleen Doucleff; E Janette Ruiz; Seth M Rubin; Alexander Pines; David E Wemmer
Journal:  Protein Sci       Date:  2005-03-01       Impact factor: 6.725

5.  A Genetically Encoded β-Lactamase Reporter for Ultrasensitive (129) Xe NMR in Mammalian Cells.

Authors:  Yanfei Wang; Benjamin W Roose; Eugene J Palovcak; Vincenzo Carnevale; Ivan J Dmochowski
Journal:  Angew Chem Int Ed Engl       Date:  2016-06-15       Impact factor: 15.336

6.  Measurement of radon and xenon binding to a cryptophane molecular host.

Authors:  David R Jacobson; Najat S Khan; Ronald Collé; Ryan Fitzgerald; Lizbeth Laureano-Pérez; Yubin Bai; Ivan J Dmochowski
Journal:  Proc Natl Acad Sci U S A       Date:  2011-06-20       Impact factor: 11.205

7.  Configuration and Performance of a Mobile (129)Xe Polarizer.

Authors:  Sergey E Korchak; Wolfgang Kilian; Lorenz Mitschang
Journal:  Appl Magn Reson       Date:  2012-11-10       Impact factor: 0.831

8.  Bacterial spore detection and analysis using hyperpolarized 129Xe chemical exchange saturation transfer (Hyper-CEST) NMR.

Authors:  Yubin Bai; Yanfei Wang; Mark Goulian; Adam Driks; Ivan J Dmochowski
Journal:  Chem Sci       Date:  2014-08-01       Impact factor: 9.825

Review 9.  Molecular Sensing with Host Systems for Hyperpolarized 129Xe.

Authors:  Jabadurai Jayapaul; Leif Schröder
Journal:  Molecules       Date:  2020-10-11       Impact factor: 4.411

Review 10.  Biomolecular MRI reporters: Evolution of new mechanisms.

Authors:  Arnab Mukherjee; Hunter C Davis; Pradeep Ramesh; George J Lu; Mikhail G Shapiro
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2017-06-03       Impact factor: 9.795

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