Literature DB >> 16426634

Structural insights into the cryptic DNA-dependent ATPase activity of UvrB.

Jitka Eryilmaz1, Simona Ceschini, James Ryan, Stella Geddes, Timothy R Waters, Tracey E Barrett.   

Abstract

The UvrABC pathway is a ubiquitously occurring mechanism targeted towards the repair of bulky base damage. Key to this process is UvrB, a DNA-dependent limited helicase that acts as a lesion recognition element whilst part of a tracking complex involving UvrA, and as a DNA-binding platform required for the presentation of damage to UvrC for subsequent processing. We have been able to determine the structure of a ternary complex involving UvrB* (a C-terminal truncation of full-length UvrB), a polythymine trinucleotide and ADP. This structure has highlighted the roles of key conserved residues in DNA binding distinct from those of the beta-hairpin, where most of the attention in previous studies has been focussed. We are also the first to report the structural basis underlying conformational re-modelling of the beta-hairpin that is absolutely required for DNA binding and how this event results in an ATPase primed for catalysis. Our data provide the first insights at the molecular level into the transformation of UvrB into an active helicase.

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Year:  2006        PMID: 16426634     DOI: 10.1016/j.jmb.2005.12.059

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  11 in total

1.  Structure and mechanism of the UvrA-UvrB DNA damage sensor.

Authors:  Danaya Pakotiprapha; Martin Samuels; Koning Shen; Johnny H Hu; David Jeruzalmi
Journal:  Nat Struct Mol Biol       Date:  2012-02-05       Impact factor: 15.369

2.  Crystal structure of Bacillus stearothermophilus UvrA provides insight into ATP-modulated dimerization, UvrB interaction, and DNA binding.

Authors:  Danaya Pakotiprapha; Yoshihiko Inuzuka; Brian R Bowman; Geri F Moolenaar; Nora Goosen; David Jeruzalmi; Gregory L Verdine
Journal:  Mol Cell       Date:  2007-12-27       Impact factor: 17.970

Review 3.  Surviving the sun: repair and bypass of DNA UV lesions.

Authors:  Wei Yang
Journal:  Protein Sci       Date:  2011-11       Impact factor: 6.725

Review 4.  Prokaryotic nucleotide excision repair.

Authors:  Caroline Kisker; Jochen Kuper; Bennett Van Houten
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-03-01       Impact factor: 10.005

5.  NMR analysis of [methyl-13C]methionine UvrB from Bacillus caldotenax reveals UvrB-domain 4 heterodimer formation in solution.

Authors:  Matthew J DellaVecchia; W Keither Merritt; Ye Peng; Thomas W Kirby; Eugene F DeRose; Geoffrey A Mueller; Bennett Van Houten; Robert E London
Journal:  J Mol Biol       Date:  2007-08-02       Impact factor: 5.469

6.  Exploring damage recognition models in prokaryotic nucleotide excision repair with a benzo[a]pyrene-derived lesion in UvrB.

Authors:  Lei Jia; Konstantin Kropachev; Shuang Ding; Bennett Van Houten; Nicholas E Geacintov; Suse Broyde
Journal:  Biochemistry       Date:  2009-09-29       Impact factor: 3.162

7.  Cooperative damage recognition by UvrA and UvrB: identification of UvrA residues that mediate DNA binding.

Authors:  Deborah L Croteau; Matthew J DellaVecchia; Lalith Perera; Bennett Van Houten
Journal:  DNA Repair (Amst)       Date:  2008-01-11

8.  Crystal structure of the UvrB dimer: insights into the nature and functioning of the UvrAB damage engagement and UvrB-DNA complexes.

Authors:  Matthew P J Webster; Rachael Jukes; Vlad S Zamfir; Christopher W M Kay; Claire Bagnéris; Tracey Barrett
Journal:  Nucleic Acids Res       Date:  2012-06-30       Impact factor: 16.971

9.  The fragment structure of a putative HsdR subunit of a type I restriction enzyme from Vibrio vulnificus YJ016: implications for DNA restriction and translocation activity.

Authors:  Nguyen To Uyen; Suk-Youl Park; Ji-Woo Choi; Hyun-Ju Lee; Kosuke Nishi; Jeong-Sun Kim
Journal:  Nucleic Acids Res       Date:  2009-07-22       Impact factor: 16.971

10.  Structural basis of the XPB helicase-Bax1 nuclease complex interacting with the repair bubble DNA.

Authors:  Feng He; Kevin DuPrez; Eduardo Hilario; Zhenhang Chen; Li Fan
Journal:  Nucleic Acids Res       Date:  2020-11-18       Impact factor: 16.971

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