Literature DB >> 16413294

Robust colorimetric assays for dynamin's basal and stimulated GTPase activities.

Marilyn Leonard1, Byeong Doo Song, Rajesh Ramachandran, Sandra L Schmid.   

Abstract

Dynamin, unlike many GTPase superfamily members, exhibits a relatively rapid basal rate of GTP hydrolysis that is not rate-limited by GTP binding or GDP dissociation. Also unique to dynamin GTPase family members is their ability to self-assemble into rings and helical stacks of rings either in solution or onto lipid templates. Self-assembly stimulates dynamin's GTPase activity by >100-fold. Given these robust rates of GTP hydrolysis compared to most GTPases, GTP hydrolysis by dynamin can be easily measured using a simple colorimetic assay to detect released phosphate. We describe this assay and report variations in assay conditions that have contributed to the wide range of reported values for dynamin's basal and assembly-stimulated rates of GTP hydrolysis.

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Year:  2005        PMID: 16413294     DOI: 10.1016/S0076-6879(05)04043-7

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  58 in total

1.  The loop 5 element structurally and kinetically coordinates dimers of the human kinesin-5, Eg5.

Authors:  Joshua S Waitzman; Adam G Larson; Jared C Cochran; Nariman Naber; Roger Cooke; F Jon Kull; Edward Pate; Sarah E Rice
Journal:  Biophys J       Date:  2011-12-07       Impact factor: 4.033

2.  Dynamin GTPase regulation is altered by PH domain mutations found in centronuclear myopathy patients.

Authors:  Jon A Kenniston; Mark A Lemmon
Journal:  EMBO J       Date:  2010-08-10       Impact factor: 11.598

3.  Identification and function of conformational dynamics in the multidomain GTPase dynamin.

Authors:  Saipraveen Srinivasan; Venkatasubramanian Dharmarajan; Dana Kim Reed; Patrick R Griffin; Sandra L Schmid
Journal:  EMBO J       Date:  2016-01-18       Impact factor: 11.598

4.  Affinity Purification and Functional Characterization of Dynamin-Related Protein 1.

Authors:  Ryan W Clinton; Brianna L Bauer; Jason A Mears
Journal:  Methods Mol Biol       Date:  2020

5.  Isolation and Analysis of Mitochondrial Fission Enzyme DNM1 from Saccharomyces cerevisiae.

Authors:  Nolan W Kennedy; Lora K Picton; R Blake Hill
Journal:  Methods Mol Biol       Date:  2020

6.  Arabidopsis dynamin-related protein 1A polymers bind, but do not tubulate, liposomes.

Authors:  Steven K Backues; Sebastian Y Bednarek
Journal:  Biochem Biophys Res Commun       Date:  2010-02-18       Impact factor: 3.575

7.  The dynamin middle domain is critical for tetramerization and higher-order self-assembly.

Authors:  Rajesh Ramachandran; Mark Surka; Joshua S Chappie; Douglas M Fowler; Ted R Foss; Byeong Doo Song; Sandra L Schmid
Journal:  EMBO J       Date:  2006-12-14       Impact factor: 11.598

8.  Real-time detection reveals that effectors couple dynamin's GTP-dependent conformational changes to the membrane.

Authors:  Rajesh Ramachandran; Sandra L Schmid
Journal:  EMBO J       Date:  2007-12-13       Impact factor: 11.598

9.  Dynamin2 GTPase and cortactin remodel actin filaments.

Authors:  Olivia L Mooren; Tatyana I Kotova; Andrew J Moore; Dorothy A Schafer
Journal:  J Biol Chem       Date:  2009-07-15       Impact factor: 5.157

10.  Dynamin-related Protein 1 Oligomerization in Solution Impairs Functional Interactions with Membrane-anchored Mitochondrial Fission Factor.

Authors:  Ryan W Clinton; Christopher A Francy; Rajesh Ramachandran; Xin Qi; Jason A Mears
Journal:  J Biol Chem       Date:  2015-11-17       Impact factor: 5.157

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