| Literature DB >> 16405730 |
Jean-Pierre Bayley1, Ivonne van Minderhout, Marjan M Weiss, Jeroen C Jansen, Peter H N Oomen, Fred H Menko, Barbara Pasini, Barbara Ferrando, Nora Wong, Lesley C Alpert, Rosie Williams, Edward Blair, Peter Devilee, Peter E M Taschner.
Abstract
BACKGROUND: Germline mutations of the SDHD, SDHB and SDHC genes, encoding three of the four subunits of succinate dehydrogenase, are a major cause of hereditary paraganglioma and pheochromocytoma, and demonstrate that these genes are classic tumor suppressors. Succinate dehydrogenase is a heterotetrameric protein complex and a component of both the Krebs cycle and the mitochondrial respiratory chain (succinate:ubiquinone oxidoreductase or complex II).Entities:
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Year: 2006 PMID: 16405730 PMCID: PMC1343542 DOI: 10.1186/1471-2350-7-1
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
Variants/mutations of SDHB and SDHC with primers, restriction enzymes, PCR restriction products, and allele frequency.
| Ser8Ser | SDHB | CGCGGCTAGTGGGTCCTCAG | 165 | Xho I | 140+25 | 165 | 4/384 |
| CAAGGGTTGTGGCCGGCAACCGGCGCCTC | |||||||
| Ala6Ala | SDHB | CAGTGGATGTAGGCTGGGCGCC | 130 | Bsr BI | 130 | 110+20 | 8/260 |
| AACCGGCGCCTCAAGGAG | |||||||
| Trp47X | SDHB | TCCTTCAATAGCTGGCTTTCACAGA | 119 | Nco I | 24 + 95 | 119 | 1/314 |
| ATCAAGAAATTTGCCATCTATC | |||||||
| Arg94Lys | SDHB | GACTCTACTTTGACCTTCCGAAGATC | 167 | Pst I | 109+33+25 | 134+33 | 0/296 |
| TAGGTTGCACAGCAAGTTCAC | |||||||
| Arg115X | SDHB | ATCAATGGAGGCAACACTCTAGCTTGCA | 150 | Pvu II | 150 | 125+25 | 0/402 |
| TGCAAATAAAAACAAAACCA | |||||||
| c.423+1G>A | SDHB | CATGTATGTGATAAAGGATCTTGTTC | 157 | Bsp HI | 157 | 132+25 | 0/294 |
| TTACTATCTGACTAGAAG | |||||||
| Trp218Ser | SDHB | AGCTAATCATCCCTGGTTTT | 215 | Taq I | 215 | 181+34 | 0/318 |
| TTGTGAGCACATGCTACTTC | |||||||
| Arg72Cys | SDHC | GCCAATGAAACAGCCAAGTT | 163 | Dsa I (=Btg I) | 49+22+92 | 49+114 | 0/328 |
| TTCCTTTTTAAAATTGTCTTTGTGTG |
aMismatched nucleotides for the PIRA PCR technique are indicated in bold. bAllele frequency is shown as total chromosomes.
Mutations of SDHB and SDHC found in this study.
| SDHB | exon 2 | c.136C>T | p.Arg46X | FGT68 | United Kingdom | 32 | Female | Sister and father (?) | Vagal and jugulotympanic paraganglioma |
| SDHB | exon 2 | c.141G>A | p.Trp47X | FGT62 | Italy | 35 | Female | Two sisters and paternal aunt, all carriers | Metastatic multifocal retroperitoneal paraganglioma |
| SDHB | exon 3 | c.281G>A | p.Arg94Lys | FGT57 | Pakistan | 56 | Male | Brothers and a nephew (proband and nephew tested and positive) | Retroperitoneal paraganglioma, jugulotympanic paraganglioma, adrenal tumor |
| SDHB | exon 4 | c.343C>T | p.Arg115X | FGT61 | Netherlands | 36 | Female | Sister and female maternal cousin | Bifocal extra-adrenal paraganglioma |
| SDHB | intron 4 | c.423+1G>A | Splice Site | S-003 | Netherlands | 50 | Male | Sporadic | Jugulotympanic paraganglioma |
| SDHB | intron 4 | c.423+1G>A | Splice Site | S-020 | Netherlands | 55 | Male | Unknown | Carotid body paraganglioma, unilateral |
| SDHB | exon 7 | c. 653G>C | p.Trp218Ser | FGT66 | Netherlands | 68 | Female | Daughter with paraganglioma | Extra-adrenal paraganglioma left para-aortal |
| SDHC | exon 4 | c.214C>T | p.Arg72Cys | S-048 | Turkey | 36 | Male | Sporadic | Carotid body paraganglioma, unilateral |
aAll mutations are novel except p.Arg46X. Mutations described in this report follow the recommended nomenclature of the HGVS, update August 2004.
Figure 1The SDHB mutation c.423+1G>A disrupts normal splicing. Primers in exon 3 and exon 5 were used to amplify cDNA. Lane 1: Patient S-020: In addition to a product of ~250 bp, a fragment missing 54 bp was also amplified (arrow). Sequencing showed an SDHB cDNA missing the proximal portion of exon 4. Lanes 2–4: RNA from three healthy controls included in the analysis revealed no additional PCR fragments, providing no evidence that the shorter product could be the result of normal alternative splicing. Lane 5: Water control. Lane 6: 100 bp ladder.