Literature DB >> 16404587

On the utility of data from the International HapMap Project for Australian association studies.

Jim Stankovich1, Charles J Cox, Rachel B Tan, Douglas S Montgomery, Stewart J Huxtable, Justin P Rubio, Margaret G Ehm, Laura Johnson, Helmut Butzkueven, Trevor J Kilpatrick, Terence P Speed, Allen D Roses, Melanie Bahlo, Simon J Foote.   

Abstract

We compare patterns of linkage disequilibrium (LD) for 633 SNPs in two regions between samples collected in two Australian states and HapMap samples collected from Utah residents of Northern and Western (NW) European ancestry (CEU). Patterns of LD in the Australian and HapMap samples are similar, and tag SNPs chosen using HapMap genotypes perform almost as well on Australian samples as tags chosen using Australian genotypes.

Mesh：

Year:  2006        PMID： 16404587     DOI： 10.1007/s00439-005-0120-y

Source DB:  PubMed          Journal:  Hum Genet        ISSN： 0340-6717            Impact factor:   4.132


  6 in total

1.  Flow cytometric platform for high-throughput single nucleotide polymorphism analysis.

Authors:  J D Taylor; D Briley; Q Nguyen; K Long; M A Iannone; M S Li; F Ye; A Afshari; E Lai; M Wagner; J Chen; M P Weiner
Journal:  Biotechniques       Date:  2001-03       Impact factor: 1.993

2.  Haploview: analysis and visualization of LD and haplotype maps.

Authors:  J C Barrett; B Fry; J Maller; M J Daly
Journal:  Bioinformatics       Date:  2004-08-05       Impact factor: 6.937

3.  Extended haplotype analysis in the HLA complex reveals an increased frequency of the HFE-C282Y mutation in individuals with multiple sclerosis.

Authors:  Justin P Rubio; Melanie Bahlo; Niall Tubridy; Jim Stankovich; Rachel Burfoot; Helmut Butzkueven; Caron Chapman; Laura Johnson; Mark Marriott; Grant Mraz; Brian Tait; Chris Wilkinson; Bruce Taylor; Terence P Speed; Simon J Foote; Trevor J Kilpatrick
Journal:  Hum Genet       Date:  2004-03-11       Impact factor: 4.132

4.  Efficiency and power in genetic association studies.

Authors:  Paul I W de Bakker; Roman Yelensky; Itsik Pe'er; Stacey B Gabriel; Mark J Daly; David Altshuler
Journal:  Nat Genet       Date:  2005-10-23       Impact factor: 38.330

5.  A haplotype map of the human genome.

Authors: 
Journal:  Nature       Date:  2005-10-27       Impact factor: 49.962

6.  Genetic dissection of the human leukocyte antigen region by use of haplotypes of Tasmanians with multiple sclerosis.

Authors:  Justin P Rubio; Melanie Bahlo; Helmut Butzkueven; Ingrid A F van Der Mei; Michèle M Sale; Joanne L Dickinson; Patricia Groom; Laura J Johnson; Rex D Simmons; Brian Tait; Mike Varney; Bruce Taylor; Terence Dwyer; Robert Williamson; Nicholas M Gough; Trevor J Kilpatrick; Terence P Speed; Simon J Foote
Journal:  Am J Hum Genet       Date:  2002-03-29       Impact factor: 11.025
  6 in total
  7 in total

1.  Comparison of linkage disequilibrium patterns between the HapMap CEPH samples and a family-based cohort of Northern European descent.

Authors:  E M Smith; X Wang; J Littrell; J Eckert; R Cole; A H Kissebah; M Olivier
Journal:  Genomics       Date:  2006-05-19       Impact factor: 5.736

2.  Analysis of extended HLA haplotypes in multiple sclerosis and narcolepsy families confirms a predisposing effect for the class I region in Tasmanian MS patients.

Authors:  Justin P Rubio; Melanie Bahlo; Jim Stankovich; Rachel K Burfoot; Laura J Johnson; Stewart Huxtable; Helmut Butzkueven; Ling Lin; Bruce V Taylor; Terence P Speed; Trevor J Kilpatrick; Emmanuel Mignot; Simon J Foote
Journal:  Immunogenetics       Date:  2007-01-26       Impact factor: 2.846

3.  HapMap tagSNP transferability in multiple populations: general guidelines.

Authors:  Jinchuan Xing; David J Witherspoon; W Scott Watkins; Yuhua Zhang; Whitney Tolpinrud; Lynn B Jorde
Journal:  Genomics       Date:  2008-05-14       Impact factor: 5.736

4.  Using population mixtures to optimize the utility of genomic databases: linkage disequilibrium and association study design in India.

Authors:  T J Pemberton; M Jakobsson; D F Conrad; G Coop; J D Wall; J K Pritchard; P I Patel; N A Rosenberg
Journal:  Ann Hum Genet       Date:  2007-05-30       Impact factor: 1.670

Review 5.  Genetic susceptibility to infectious diseases: big is beautiful, but will bigger be even better?

Authors:  David Burgner; Sarra E Jamieson; Jenefer M Blackwell
Journal:  Lancet Infect Dis       Date:  2006-10       Impact factor: 25.071

6.  Genetic analysis of the clusterin gene in pseudoexfoliation syndrome.

Authors:  Kathryn P Burdon; Shiwani Sharma; Alex W Hewitt; Amy E McMellon; Jie Jin Wang; David A Mackey; Paul Mitchell; Jamie E Craig
Journal:  Mol Vis       Date:  2008-09-22       Impact factor: 2.367

7.  An evaluation of the performance of HapMap SNP data in a Shanghai Chinese population: analyses of allele frequency, linkage disequilibrium pattern and tagging SNPs transferability on chromosome 1q21-q25.

Authors:  Cheng Hu; Weiping Jia; Weihua Zhang; Congrong Wang; Rong Zhang; Jie Wang; Xiaojing Ma; Kunsan Xiang
Journal:  BMC Genet       Date:  2008-02-27       Impact factor: 2.797
  7 in total

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