Literature DB >> 16401082

Radical intermediates in the catalytic oxidation of hydrocarbons by bacterial and human cytochrome P450 enzymes.

Yongying Jiang1, Xiang He, Paul R Ortiz de Montellano.   

Abstract

Cytochromes P450cam and P450BM3 oxidize alpha- and beta-thujone into multiple products, including 7-hydroxy-alpha-(or beta-)thujone, 7,8-dehydro-alpha-(or beta-)thujone, 4-hydroxy-alpha-(or beta-)thujone, 2-hydroxy-alpha-(or beta-)thujone, 5-hydroxy-5-isopropyl-2-methyl-2-cyclohexen-1-one, 4,10-dehydrothujone, and carvacrol. Quantitative analysis of the 4-hydroxylated isomers and the ring-opened product indicates that the hydroxylation proceeds via a radical mechanism with a radical recombination rate ranging from 0.7 +/- 0.3 x 10(10) s(-1) to 12.5 +/- 3 x 10(10) s(-1) for the trapping of the carbon radical by the iron-bound hydroxyl radical equivalent. 7-[2H]-alpha-Thujone has been synthesized and used to amplify C-4 hydroxylation in situations where uninformative C-7 hydroxylation is the dominant reaction. The involvement of a carbon radical intermediate is confirmed by the observation of inversion of stereochemistry of the methyl-substituted C-4 carbon during the hydroxylation. With an L244A mutation that slightly increases the P450(cam) active-site volume, this inversion is observed in up to 40% of the C-4 hydroxylated products. The oxidation of alpha-thujone by human CYP1A2, CYP2C9, CYP2C19, CYP2D6, CYP2E1, and CYP3A4 occurs with up to 80% C-4 methyl inversion, in agreement with a dominant radical hydroxylation mechanism. Three minor desaturation products are produced, with at least one of them via a cationic pathway. The cation involved is proposed to form by electron abstraction from a radical intermediate. The absence of a solvent deuterium isotope effect on product distribution in the P450cam reaction precludes a significant role for the P450 ferric hydroperoxide intermediate in substrate hydroxylation. The results indicate that carbon hydroxylation is catalyzed exclusively by a P450 ferryl species via radical intermediates whose detailed properties are substrate- and enzyme-dependent.

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Year:  2006        PMID: 16401082      PMCID: PMC2566308          DOI: 10.1021/bi051840z

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  22 in total

1.  A predictive pattern of computed barriers for C-h hydroxylation by compound I of cytochrome p450.

Authors:  Sam P de Visser; Devesh Kumar; Shimrit Cohen; Ronen Shacham; Sason Shaik
Journal:  J Am Chem Soc       Date:  2004-07-14       Impact factor: 15.419

2.  Crystallographic study on the dioxygen complex of wild-type and mutant cytochrome P450cam. Implications for the dioxygen activation mechanism.

Authors:  Shingo Nagano; Thomas L Poulos
Journal:  J Biol Chem       Date:  2005-06-30       Impact factor: 5.157

3.  Mechanism of cytochrome P4503A4- and 2D6-catalyzed dehydrogenation of ezlopitant as probed with isotope effects using five deuterated analogs.

Authors:  R S Obach
Journal:  Drug Metab Dispos       Date:  2001-12       Impact factor: 3.922

4.  alpha- and beta-Thujones (herbal medicines and food additives): synthesis and analysis of hydroxy and dehydro metabolites.

Authors:  N S Sirisoma; K M Höld; J E Casida
Journal:  J Agric Food Chem       Date:  2001-04       Impact factor: 5.279

5.  Detoxification of alpha- and beta-Thujones (the active ingredients of absinthe): site specificity and species differences in cytochrome P450 oxidation in vitro and in vivo.

Authors:  K M Höld; N S Sirisoma; J E Casida
Journal:  Chem Res Toxicol       Date:  2001-05       Impact factor: 3.739

6.  Alpha-thujone (the active component of absinthe): gamma-aminobutyric acid type A receptor modulation and metabolic detoxification.

Authors:  K M Höld; N S Sirisoma; T Ikeda; T Narahashi; J E Casida
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

7.  Revisiting the mechanism of P450 enzymes with the radical clocks norcarane and spiro[2,5]octane.

Authors:  Karine Auclair; Zhengbo Hu; Dorothy M Little; Paul R Ortiz De Montellano; John T Groves
Journal:  J Am Chem Soc       Date:  2002-05-29       Impact factor: 15.419

8.  Epoxidation of olefins by hydroperoxo-ferric cytochrome P450.

Authors:  Shengxi Jin; Thomas M Makris; Thomas A Bryson; Stephen G Sligar; John H Dawson
Journal:  J Am Chem Soc       Date:  2003-03-26       Impact factor: 15.419

9.  Cyclopropyl fatty acids implicate a radical but not a cation as an intermediate in P450BM3-catalysed hydroxylations.

Authors:  Max J Cryle; Julia M U Stuthe; Paul R Ortiz de Montellano; James J De Voss
Journal:  Chem Commun (Camb)       Date:  2004-01-27       Impact factor: 6.222

10.  Alpha- and beta-thujone radical rearrangements and isomerizations. A new radical clock.

Authors:  Xiang He; Paul R Ortiz de Montellano
Journal:  J Org Chem       Date:  2004-08-20       Impact factor: 4.354

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  16 in total

1.  Molecular probes of the mechanism of cytochrome P450. Oxygen traps a substrate radical intermediate.

Authors:  Harriet L R Cooper; John T Groves
Journal:  Arch Biochem Biophys       Date:  2010-11-12       Impact factor: 4.013

2.  Genome mining in streptomyces. Discovery of an unprecedented P450-catalyzed oxidative rearrangement that is the final step in the biosynthesis of pentalenolactone.

Authors:  Dongqing Zhu; Myung-Ji Seo; Haruo Ikeda; David E Cane
Journal:  J Am Chem Soc       Date:  2011-02-01       Impact factor: 15.419

Review 3.  Rearrangement reactions catalyzed by cytochrome P450s.

Authors:  Paul R Ortiz de Montellano; Sidney D Nelson
Journal:  Arch Biochem Biophys       Date:  2010-10-29       Impact factor: 4.013

Review 4.  Formation and Cleavage of C-C Bonds by Enzymatic Oxidation-Reduction Reactions.

Authors:  F Peter Guengerich; Francis K Yoshimoto
Journal:  Chem Rev       Date:  2018-06-22       Impact factor: 60.622

5.  The Cytochrome P450-Catalyzed Oxidative Rearrangement in the Final Step of Pentalenolactone Biosynthesis: Substrate Structure Determines Mechanism.

Authors:  Lian Duan; Gerwald Jogl; David E Cane
Journal:  J Am Chem Soc       Date:  2016-09-16       Impact factor: 15.419

6.  Cooperative effects on radical recombination in CYP3A4-catalyzed oxidation of the radical clock beta-thujone.

Authors:  Yongying Jiang; Paul R Ortiz de Montellano
Journal:  Chembiochem       Date:  2009-03-02       Impact factor: 3.164

7.  PPAR/RXR Regulation of Fatty Acid Metabolism and Fatty Acid omega-Hydroxylase (CYP4) Isozymes: Implications for Prevention of Lipotoxicity in Fatty Liver Disease.

Authors:  James P Hardwick; Douglas Osei-Hyiaman; Homer Wiland; Mohamed A Abdelmegeed; Byoung-Joon Song
Journal:  PPAR Res       Date:  2010-03-16       Impact factor: 4.964

8.  Parallel and competitive pathways for substrate desaturation, hydroxylation, and radical rearrangement by the non-heme diiron hydroxylase AlkB.

Authors:  Harriet L R Cooper; Girish Mishra; Xiongyi Huang; Marilla Pender-Cudlip; Rachel N Austin; John Shanklin; John T Groves
Journal:  J Am Chem Soc       Date:  2012-12-10       Impact factor: 15.419

9.  Efficient catalytic turnover of cytochrome P450(cam) is supported by a T252N mutation.

Authors:  Donghak Kim; Yong-Seok Heo; Paul R Ortiz de Montellano
Journal:  Arch Biochem Biophys       Date:  2008-03-10       Impact factor: 4.013

Review 10.  Hydrocarbon hydroxylation by cytochrome P450 enzymes.

Authors:  Paul R Ortiz de Montellano
Journal:  Chem Rev       Date:  2010-02-10       Impact factor: 60.622

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