Literature DB >> 16384101

Low-force DNA condensation and discontinuous high-force decondensation reveal a loop-stabilizing function of the protein Fis.

Dunja Skoko1, Jie Yan, Reid C Johnson, John F Marko.   

Abstract

We report single-DNA-stretching experiments showing that the protein Fis, an abundant bacterial chromosome protein of E. coli, mediates a dramatic DNA condensation to zero length. This condensation occurs abruptly when DNA tension is reduced below a protein-concentration-dependent threshold f* < 1 pN. Following condensation, reopening under larger forces proceeds via a series of discrete jumps, indicating that Fis is able to stabilize DNA crossings. Our experiments suggest that Fis may play a role in vivo stabilizing the "loop-domain" structure of the bacterial chromosome.

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Year:  2005        PMID: 16384101     DOI: 10.1103/PhysRevLett.95.208101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  30 in total

1.  The role of the local environment of engineered Tyr to Trp substitutions for probing the denaturation mechanism of FIS.

Authors:  Virginia A Muñiz; Saipraveen Srinivasan; Sarah A Boswell; Derrick W Meinhold; Tawanna Childs; Robert Osuna; Wilfredo Colón
Journal:  Protein Sci       Date:  2011-02       Impact factor: 6.725

2.  Altered regulation of the OmpF porin by Fis in Escherichia coli during an evolution experiment and between B and K-12 strains.

Authors:  Estelle Crozat; Thomas Hindré; Lauriane Kühn; Jérome Garin; Richard E Lenski; Dominique Schneider
Journal:  J Bacteriol       Date:  2010-11-19       Impact factor: 3.490

Review 3.  Loops in DNA: an overview of experimental and theoretical approaches.

Authors:  J-F Allemand; S Cocco; N Douarche; G Lia
Journal:  Eur Phys J E Soft Matter       Date:  2006-03-23       Impact factor: 1.890

4.  Structural change of DNA induced by nucleoid proteins: growth phase-specific Fis and stationary phase-specific Dps.

Authors:  Yuko T Sato; Shun Watanabe; Takahiro Kenmotsu; Masatoshi Ichikawa; Yuko Yoshikawa; Jun Teramoto; Tadayuki Imanaka; Akira Ishihama; Kenichi Yoshikawa
Journal:  Biophys J       Date:  2013-08-20       Impact factor: 4.033

5.  Site-specific DNA Inversion by Serine Recombinases.

Authors:  Reid C Johnson
Journal:  Microbiol Spectr       Date:  2015-02-19

6.  Force-Dependent Facilitated Dissociation Can Generate Protein-DNA Catch Bonds.

Authors:  Katelyn Dahlke; Jing Zhao; Charles E Sing; Edward J Banigan
Journal:  Biophys J       Date:  2019-08-02       Impact factor: 4.033

7.  Mechanism of chromosome compaction and looping by the Escherichia coli nucleoid protein Fis.

Authors:  Dunja Skoko; Daniel Yoo; Hua Bai; Bernhard Schnurr; Jie Yan; Sarah M McLeod; John F Marko; Reid C Johnson
Journal:  J Mol Biol       Date:  2006-09-22       Impact factor: 5.469

8.  Bacterial stationary-state mutagenesis and Mammalian tumorigenesis as stress-induced cellular adaptations and the role of epigenetics.

Authors:  Tv Karpinets; Dj Greenwood; Ip Pogribny; Nf Samatova
Journal:  Curr Genomics       Date:  2006       Impact factor: 2.236

9.  HMGB binding to DNA: single and double box motifs.

Authors:  Micah J McCauley; Jeff Zimmerman; L James Maher; Mark C Williams
Journal:  J Mol Biol       Date:  2007-09-29       Impact factor: 5.469

10.  Cisplatin induces loop structures and condensation of single DNA molecules.

Authors:  Xi-Miao Hou; Xing-Hua Zhang; Kong-Ji Wei; Chao Ji; Shuo-Xing Dou; Wei-Chi Wang; Ming Li; Peng-Ye Wang
Journal:  Nucleic Acids Res       Date:  2009-01-07       Impact factor: 16.971

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