Literature DB >> 16383661

Elasticity theory and shape transitions of viral shells.

T T Nguyen1, Robijn F Bruinsma, William M Gelbart.   

Abstract

Recently, continuum elasticity theory has been applied to explain the shape transition of icosahedral viral capsids--single-protein-thick crystalline shells--from spherical to "buckled" or faceted as their radius increases through a critical value determined by the competition between stretching and bending energies of a closed two-dimensional (2D) elastic network. In the present work we generalize this approach to capsids with nonicosahedral symmetries, e.g., spherocylindrical and conical shells. One key additional physical ingredient is the role played by nonzero spontaneous curvature. Another is associated with the special way in which the energy of the 12 topologically required fivefold sites depends on the "background" local curvature of the shell in which they are embedded. Systematic evaluation of these contributions leads to a shape "phase" diagram in which transitions are observed from icosahedral to spherocylindrical capsids as a function of the ratio of stretching to bending energies and of the spontaneous curvature of the 2D protein network. We find that the transition from icosahedral to spherocylindrical symmetry is continuous or weakly first order near the onset of buckling, leading to extensive shape degeneracy. These results are discussed in the context of experimentally observed variations in the shapes of a variety of viral capsids.

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Year:  2005        PMID: 16383661     DOI: 10.1103/PhysRevE.72.051923

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  28 in total

1.  Determination of viral capsid elastic properties from equilibrium thermal fluctuations.

Authors:  Eric R May; Charles L Brooks
Journal:  Phys Rev Lett       Date:  2011-05-02       Impact factor: 9.161

2.  On the morphology of viral capsids: elastic properties and buckling transitions.

Authors:  Eric R May; Charles L Brooks
Journal:  J Phys Chem B       Date:  2012-03-27       Impact factor: 2.991

3.  Squeezing protein shells: how continuum elastic models, molecular dynamics simulations, and experiments coalesce at the nanoscale.

Authors:  W H Roos; M M Gibbons; A Arkhipov; C Uetrecht; N R Watts; P T Wingfield; A C Steven; A J R Heck; K Schulten; W S Klug; G J L Wuite
Journal:  Biophys J       Date:  2010-08-09       Impact factor: 4.033

4.  The structure of elongated viral capsids.

Authors:  Antoni Luque; David Reguera
Journal:  Biophys J       Date:  2010-06-16       Impact factor: 4.033

5.  Mechanical deformation of spherical viruses with icosahedral symmetry.

Authors:  Gerard Adriaan Vliegenthart; Gerhard Gompper
Journal:  Biophys J       Date:  2006-05-05       Impact factor: 4.033

6.  Modeling Viral Capsid Assembly.

Authors:  Michael F Hagan
Journal:  Adv Chem Phys       Date:  2014       Impact factor: 1.000

7.  Geometric considerations in virus capsid size specificity, auxiliary requirements, and buckling.

Authors:  Ranjan V Mannige; Charles L Brooks
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-13       Impact factor: 11.205

8.  Modeling and simulation of the mechanical response from nanoindentation test of DNA-filled viral capsids.

Authors:  Aylin Ahadi; Dan Johansson; Alex Evilevitch
Journal:  J Biol Phys       Date:  2013-03-02       Impact factor: 1.365

9.  Viral capsid equilibrium dynamics reveals nonuniform elastic properties.

Authors:  Eric R May; Ankush Aggarwal; William S Klug; Charles L Brooks
Journal:  Biophys J       Date:  2011-06-08       Impact factor: 4.033

10.  Primary changes of the mechanical properties of Southern Bean Mosaic Virus upon calcium removal.

Authors:  Mareike Zink; Helmut Grubmüller
Journal:  Biophys J       Date:  2010-02-17       Impact factor: 4.033

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