Literature DB >> 16380421

Specific, efficient, and selective inhibition of prokaryotic translation initiation by a novel peptide antibiotic.

Letizia Brandi1, Attilio Fabbretti, Anna La Teana, Monica Abbondi, Daniele Losi, Stefano Donadio, Claudio O Gualerzi.   

Abstract

Many known antibiotics target the translational apparatus, but none of them can selectively inhibit initiation of protein synthesis and/or is prokaryotic-specific. This article describes the properties of GE81112, an effective and prokaryotic-specific initiation inhibitor. GE81112 is a natural tetrapeptide produced by a Streptomyces sp. identified by an in vitro high-throughput screening test developed to find inhibitors of the prokaryotic translational apparatus preferentially acting on steps other than elongation. In vivo GE81112 inhibits protein synthesis but not other cell functions such as DNA duplication, transcription, and cell wall synthesis. In vitro GE81112 was found to target the 30S ribosomal subunit and to interfere with both coded and noncoded P-site binding of fMet-tRNA, thereby selectively inhibiting formation of the 30S initiation complex.

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Year:  2005        PMID: 16380421      PMCID: PMC1324990          DOI: 10.1073/pnas.0507740102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  32 in total

1.  Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3.

Authors:  M Pioletti; F Schlünzen; J Harms; R Zarivach; M Glühmann; H Avila; A Bashan; H Bartels; T Auerbach; C Jacobi; T Hartsch; A Yonath; F Franceschi
Journal:  EMBO J       Date:  2001-04-17       Impact factor: 11.598

2.  Co-translational folding of an eukaryotic multidomain protein in a prokaryotic translation system.

Authors:  V A Kolb; E V Makeyev; A S Spirin
Journal:  J Biol Chem       Date:  2000-06-02       Impact factor: 5.157

3.  Transit of tRNA through the Escherichia coli ribosome: cross-linking of the 3' end of tRNA to ribosomal proteins at the P and E sites.

Authors:  Stanislav V Kirillov; Jacek Wower; Stephen S Hixson; Robert A Zimmermann
Journal:  FEBS Lett       Date:  2002-03-06       Impact factor: 4.124

Review 4.  Initiation factors in the early events of mRNA translation in bacteria.

Authors:  C O Gualerzi; L Brandi; E Caserta; C Garofalo; M Lammi; A La Teana; D Petrelli; R Spurio; J Tomsic; C L Pon
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2001

5.  Dissecting the ribosomal inhibition mechanisms of edeine and pactamycin: the universally conserved residues G693 and C795 regulate P-site RNA binding.

Authors:  George Dinos; Daniel N Wilson; Yoshika Teraoka; Witold Szaflarski; Paola Fucini; Dimitrios Kalpaxis; Knud H Nierhaus
Journal:  Mol Cell       Date:  2004-01-16       Impact factor: 17.970

6.  X-ray crystal structures of the WT and a hyper-accurate ribosome from Escherichia coli.

Authors:  Antón Vila-Sanjurjo; William K Ridgeway; Veysel Seymaner; Wen Zhang; Steve Santoso; Kexin Yu; Jamie H Doudna Cate
Journal:  Proc Natl Acad Sci U S A       Date:  2003-07-09       Impact factor: 11.205

Review 7.  The 30S ribosomal P site: a function of 16S rRNA.

Authors:  Harry F Noller; Lee Hoang; Kurt Fredrick
Journal:  FEBS Lett       Date:  2005-02-07       Impact factor: 4.124

8.  Inhibition of bacterial IF2 binding to fMet-tRNA((fMet)) by aminoglycosides.

Authors:  J M Evans; B A Turner; S Bowen; A M Ho; R W Sarver; E Benson; C N Parker
Journal:  Bioorg Med Chem Lett       Date:  2003-03-24       Impact factor: 2.823

9.  Studies on translocation. IV. The hydrolysis of a single round of guanosine triphosphate in the presence of fusidic acid.

Authors:  J W Bodley; F J Zieve; L Lin
Journal:  J Biol Chem       Date:  1970-11-10       Impact factor: 5.157

10.  Differential inhibition of 30S and 70S translation initiation complexes on leaderless mRNA by kasugamycin.

Authors:  Isabella Moll; Udo Bläsi
Journal:  Biochem Biophys Res Commun       Date:  2002-10-04       Impact factor: 3.575

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  20 in total

1.  Insights into an unusual nonribosomal peptide synthetase biosynthesis: identification and characterization of the GE81112 biosynthetic gene cluster.

Authors:  Tina M Binz; Sonia I Maffioli; Margherita Sosio; Stefano Donadio; Rolf Müller
Journal:  J Biol Chem       Date:  2010-08-14       Impact factor: 5.157

2.  Characterization of GE82832, a peptide inhibitor of translocation interacting with bacterial 30S ribosomal subunits.

Authors:  Letizia Brandi; Attilio Fabbretti; Michele Di Stefano; Ameriga Lazzarini; Monica Abbondi; Claudio O Gualerzi
Journal:  RNA       Date:  2006-05-12       Impact factor: 4.942

3.  The inhibitory mechanism of protein synthesis by YoeB, an Escherichia coli toxin.

Authors:  Yonglong Zhang; Masayori Inouye
Journal:  J Biol Chem       Date:  2009-01-05       Impact factor: 5.157

Review 4.  Ribosome-targeting antibiotics and mechanisms of bacterial resistance.

Authors:  Daniel N Wilson
Journal:  Nat Rev Microbiol       Date:  2014-01       Impact factor: 60.633

5.  Characterization of a Citrulline 4-Hydroxylase from Nonribosomal Peptide GE81112 Biosynthesis and Engineering of Its Substrate Specificity for the Chemoenzymatic Synthesis of Enduracididine.

Authors:  Christian R Zwick; Max B Sosa; Hans Renata
Journal:  Angew Chem Int Ed Engl       Date:  2019-11-11       Impact factor: 15.336

6.  Inhibition of translation initiation complex formation by GE81112 unravels a 16S rRNA structural switch involved in P-site decoding.

Authors:  Attilio Fabbretti; Andreas Schedlbauer; Letizia Brandi; Tatsuya Kaminishi; Anna Maria Giuliodori; Raffaella Garofalo; Borja Ochoa-Lizarralde; Chie Takemoto; Shigeyuki Yokoyama; Sean R Connell; Claudio O Gualerzi; Paola Fucini
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-06       Impact factor: 11.205

Review 7.  Bacterial Protein Synthesis as a Target for Antibiotic Inhibition.

Authors:  Stefan Arenz; Daniel N Wilson
Journal:  Cold Spring Harb Perspect Med       Date:  2016-09-01       Impact factor: 6.915

8.  Modular Chemoenzymatic Synthesis of GE81112 B1 and Related Analogues Enables Elucidation of Its Key Pharmacophores.

Authors:  Christian R Zwick; Max B Sosa; Hans Renata
Journal:  J Am Chem Soc       Date:  2021-01-08       Impact factor: 15.419

9.  Structural signatures of antibiotic binding sites on the ribosome.

Authors:  Hilda David-Eden; Alexander S Mankin; Yael Mandel-Gutfreund
Journal:  Nucleic Acids Res       Date:  2010-05-21       Impact factor: 16.971

10.  Selection of small peptides, inhibitors of translation.

Authors:  Beatriz Llano-Sotelo; Dorota Klepacki; Alexander S Mankin
Journal:  J Mol Biol       Date:  2009-07-02       Impact factor: 5.469

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