Literature DB >> 16377012

Removal of humic substances from soil DNA using aluminium sulfate.

Dexian Dong1, An Yan, Haiming Liu, Xuehong Zhang, Yuquan Xu.   

Abstract

Direct extraction of soil DNA has become essential for the study of soil microorganisms. Humic substances co-extracted during DNA retrieval is a big problem because it greatly inhibits the enzymes involved in manipulating DNA. Popular commercial kits available for soil DNA extraction are unable to overcome this problem. Here we report an effective protocol for the removal of humic substance from soil DNA. The protocol involves flocculation of the humic substance by excessive Al(3+), then removal of superfluous Al(3+) via pH adjustment and finally release of soil microbial DNA by SDS lysis. This technique is superior to that employed by the UltraClean Soil DNA Kit and can be applied to a wide variety of soils.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 16377012     DOI: 10.1016/j.mimet.2005.11.010

Source DB:  PubMed          Journal:  J Microbiol Methods        ISSN: 0167-7012            Impact factor:   2.363


  17 in total

1.  High-sensitivity stable-isotope probing by a quantitative terminal restriction fragment length polymorphism protocol.

Authors:  Peter Andeer; Stuart E Strand; David A Stahl
Journal:  Appl Environ Microbiol       Date:  2011-10-28       Impact factor: 4.792

2.  Extraction of mRNA from soil.

Authors:  Carsten Mettel; Yongkyu Kim; Pravin Malla Shrestha; Werner Liesack
Journal:  Appl Environ Microbiol       Date:  2010-07-09       Impact factor: 4.792

3.  Innovative methods for soil DNA purification tested in soils with widely differing characteristics.

Authors:  Marketa Sagova-Mareckova; Ladislav Cermak; Jitka Novotna; Kamila Plhackova; Jana Forstova; Jan Kopecky
Journal:  Appl Environ Microbiol       Date:  2008-03-14       Impact factor: 4.792

4.  PCR-DGGE comparison of bacterial community structure in fresh and archived soils sampled along a Chihuahuan Desert elevational gradient.

Authors:  James H Campbell; Jeb S Clark; John C Zak
Journal:  Microb Ecol       Date:  2008-12-24       Impact factor: 4.552

5.  Strategy for extracting DNA from clay soil and detecting a specific target sequence via selective enrichment and real-time (quantitative) PCR amplification.

Authors:  Kweku K Yankson; Todd R Steck
Journal:  Appl Environ Microbiol       Date:  2009-07-24       Impact factor: 4.792

6.  Production of phytohormones, siderophores and population fluctuation of two root-promoting rhizobacteria in Eucalyptus globulus cuttings.

Authors:  Katy Díaz Peralta; Támara Araya; Sofía Valenzuela; Katherine Sossa; Miguel Martínez; Hugo Peña-Cortés; Eugenio Sanfuentes
Journal:  World J Microbiol Biotechnol       Date:  2012-01-15       Impact factor: 3.312

7.  Statistical assessment of DNA extraction methodology for culture-independent analysis of microbial community associated with diverse environmental samples.

Authors:  Rishi Mahajan; Sampan Attri; Kavita Sharma; Niharika Singh; Deepika Sharma; Gunjan Goel
Journal:  Mol Biol Rep       Date:  2018-02-16       Impact factor: 2.316

8.  Genome instability mediates the loss of key traits by Acinetobacter baylyi ADP1 during laboratory evolution.

Authors:  Brian A Renda; Aurko Dasgupta; Dacia Leon; Jeffrey E Barrick
Journal:  J Bacteriol       Date:  2014-12-15       Impact factor: 3.490

9.  Accurate quantification of microorganisms in PCR-inhibiting environmental DNA extracts by a novel internal amplification control approach using Biotrove OpenArrays.

Authors:  R van Doorn; M M Klerks; M P E van Gent-Pelzer; A G C L Speksnijder; G A Kowalchuk; C D Schoen
Journal:  Appl Environ Microbiol       Date:  2009-10-02       Impact factor: 4.792

10.  Pathogen quantitation in complex matrices: a multi-operator comparison of DNA extraction methods with a novel assessment of PCR inhibition.

Authors:  Alessandra Pontiroli; Emma Rachel Travis; Francis Patrick Sweeney; David Porter; William Hugo Gaze; Sam Mason; Victoria Hibberd; Jennifer Holden; Orin Courtenay; Elizabeth Margaret Helen Wellington
Journal:  PLoS One       Date:  2011-03-23       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.