Literature DB >> 16376602

Modeling plant morphogenesis.

Przemyslaw Prusinkiewicz1, Anne-Gaëlle Rolland-Lagan.   

Abstract

Applications of computational techniques to developmental plant biology include the processing of experimental data and the construction of simulation models. Substantial progress has been made in these areas over the past few years. Complex image-processing techniques are used to integrate sequences of two-dimensional images into three-dimensional descriptions of development over time and to extract useful quantitative traits. Large amounts of data are integrated into empirical models of developing plant organs and entire plants. Mechanistic models link molecular-level phenomena with the resulting phenotypes. Several models shed light on the possible properties of active auxin transport and its role in plant morphogenesis.

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Year:  2005        PMID: 16376602     DOI: 10.1016/j.pbi.2005.11.015

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  10 in total

Review 1.  Auxin transporters--why so many?

Authors:  Eva Zazímalová; Angus S Murphy; Haibing Yang; Klára Hoyerová; Petr Hosek
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-03       Impact factor: 10.005

2.  Pattern selection in plants: coupling chemical dynamics to surface growth in three dimensions.

Authors:  David M Holloway; Lionel G Harrison
Journal:  Ann Bot       Date:  2007-11-28       Impact factor: 4.357

3.  Plant growth modelling and applications: the increasing importance of plant architecture in growth models.

Authors:  Thierry Fourcaud; Xiaopeng Zhang; Alexia Stokes; Hans Lambers; Christian Körner
Journal:  Ann Bot       Date:  2008-04-03       Impact factor: 4.357

Review 4.  Plant intelligence: why, why not or where?

Authors:  Fatima Cvrcková; Helena Lipavská; Viktor Zárský
Journal:  Plant Signal Behav       Date:  2009-05-24

Review 5.  Computational morphodynamics: a modeling framework to understand plant growth.

Authors:  Vijay Chickarmane; Adrienne H K Roeder; Paul T Tarr; Alexandre Cunha; Cory Tobin; Elliot M Meyerowitz
Journal:  Annu Rev Plant Biol       Date:  2010       Impact factor: 26.379

6.  Combined computational modeling and experimental analysis integrating chemical and mechanical signals suggests possible mechanism of shoot meristem maintenance.

Authors:  Mikahl Banwarth-Kuhn; Kevin Rodriguez; Christian Michael; Calvin-Khang Ta; Alexander Plong; Eric Bourgain-Chang; Ali Nematbakhsh; Weitao Chen; Amit Roy-Chowdhury; G Venugopala Reddy; Mark Alber
Journal:  PLoS Comput Biol       Date:  2022-06-21       Impact factor: 4.779

7.  NPY genes and AGC kinases define two key steps in auxin-mediated organogenesis in Arabidopsis.

Authors:  Youfa Cheng; Genji Qin; Xinhua Dai; Yunde Zhao
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-15       Impact factor: 11.205

Review 8.  Advanced imaging techniques for the study of plant growth and development.

Authors:  Rosangela Sozzani; Wolfgang Busch; Edgar P Spalding; Philip N Benfey
Journal:  Trends Plant Sci       Date:  2014-01-13       Impact factor: 18.313

9.  An auxin gradient and maximum in the Arabidopsis root apex shown by high-resolution cell-specific analysis of IAA distribution and synthesis.

Authors:  Sara V Petersson; Annika I Johansson; Mariusz Kowalczyk; Alexander Makoveychuk; Jean Y Wang; Thomas Moritz; Markus Grebe; Philip N Benfey; Göran Sandberg; Karin Ljung
Journal:  Plant Cell       Date:  2009-06-02       Impact factor: 11.277

10.  Transcription factors relevant to auxin signalling coordinate broad-spectrum metabolic shifts including sulphur metabolism.

Authors:  Bettina Falkenberg; Isabell Witt; Maria Inés Zanor; Dirk Steinhauser; Bernd Mueller-Roeber; Holger Hesse; Rainer Hoefgen
Journal:  J Exp Bot       Date:  2008       Impact factor: 6.992

  10 in total

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