Literature DB >> 16375407

Carbohydrate intramolecular hydrogen bonding cooperativity and its effect on water structure.

Jennifer L Dashnau1, Kim A Sharp, Jane M Vanderkooi.   

Abstract

Molecular dynamics (MD) simulations combined with water-water H-bond angle analysis and calculation of solvent accessible surface area and approximate free energy of solvation were used to determine the influence of hydroxyl orientation on solute hydration and surrounding water structure for a group of chemically identical solutes-the aldohexopyranose sugars. Intramolecular hydrogen bond cooperativity was closely associated with changes in water structure surrounding the aldohexopyranose stereoisomers. The OH-4 group played a pivotal role in hydration as it was able to participate in a number of hydrogen bond networks utilizing the OH-6 group. Networks that terminated within the molecule (OH-4 --> OH-6 --> O-5) had relatively more nonpolar-like hydration than those that ended in a free hydroxyl group (OH-6 --> OH-4 --> OH-3). The OH-2 group modulated the strength of OH-4 networks through syndiaxial OH-2/4 intramolecular hydrogen bonding, which stabilized and induced directionality in the network. Other syndiaxial interactions, such as the one between OH-1 and OH-3, only indirectly affected water structure. Water structure surrounding hydrogen bond networks is discussed in terms of water-water hydrogen bond populations. The impact of syndiaxial versus vicinal hydrogen bonds is also reviewed. The results suggest that biological events such as protein-carbohydrate recognition and cryoprotection by carbohydrates may be driven by intramolecular hydrogen bond cooperativity.

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Year:  2005        PMID: 16375407     DOI: 10.1021/jp0543072

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  19 in total

1.  Thermal stability of glucokinase (GK) as influenced by the substrate glucose, an allosteric glucokinase activator drug (GKA) and the osmolytes glycerol and urea.

Authors:  B Zelent; C Buettger; J Grimsby; R Sarabu; J M Vanderkooi; A J Wand; F M Matschinsky
Journal:  Biochim Biophys Acta       Date:  2012-03-16

2.  Intramolecular hydrogen-bonding in aqueous carbohydrates as a cause or consequence of conformational preferences: a molecular dynamics study of cellobiose stereoisomers.

Authors:  Dongqi Wang; Maria Lovísa Ámundadóttir; Wilfred F van Gunsteren; Philippe H Hünenberger
Journal:  Eur Biophys J       Date:  2013-05-10       Impact factor: 1.733

3.  Testing the CP-correction procedure with different DFT methods on H-bonding complexes of κ-carrabiose with water molecules.

Authors:  Rachida Fodil; Majda Sekkal-Rahal; Adlane Sayede
Journal:  J Mol Model       Date:  2017-01-14       Impact factor: 1.810

4.  Molecular simulations of dodecyl-β-maltoside micelles in water: influence of the headgroup conformation and force field parameters.

Authors:  Stéphane Abel; François-Yves Dupradeau; E Prabhu Raman; Alexander D MacKerell; Massimo Marchi
Journal:  J Phys Chem B       Date:  2010-12-30       Impact factor: 2.991

5.  Tryptophan Fluorescence Yields and Lifetimes as a Probe of Conformational Changes in Human Glucokinase.

Authors:  Bogumil Zelent; Chris Bialas; Ignacy Gryczynski; Pan Chen; Rahul Chib; Karina Lewerissa; Maria G Corradini; Richard D Ludescher; Jane M Vanderkooi; Franz M Matschinsky
Journal:  J Fluoresc       Date:  2017-04-22       Impact factor: 2.217

6.  Osmolyte-induced perturbations of hydrogen bonding between hydration layer waters: correlation with protein conformational changes.

Authors:  Feng Guo; Joel M Friedman
Journal:  J Phys Chem B       Date:  2009-12-31       Impact factor: 2.991

7.  Water structure in vitro and within Saccharomyces cerevisiae yeast cells under conditions of heat shock.

Authors:  Jennifer L Dashnau; Laura K Conlin; Hillary C M Nelson; Jane M Vanderkooi
Journal:  Biochim Biophys Acta       Date:  2007-09-26

8.  Infrared spectroscopy used to study ice formation: the effect of trehalose, maltose, and glucose on melting.

Authors:  B Zelent; J M Vanderkooi
Journal:  Anal Biochem       Date:  2009-04-17       Impact factor: 3.365

9.  Gelling ability of kefiran in the presence of sucrose and fructose and physicochemical characterization of the resulting cryogels.

Authors:  Lucía Zavala; Paula Roberti; Judith A Piermaria; Analía G Abraham
Journal:  J Food Sci Technol       Date:  2014-09-23       Impact factor: 2.701

10.  Effects of Stereochemistry and Hydrogen Bonding on Glycopolymer-Amyloid-β Interactions.

Authors:  Ashleigh N Bristol; Jhinuk Saha; Hannah E George; Pradipta K Das; Lisa K Kemp; William L Jarrett; Vijayaraghavan Rangachari; Sarah E Morgan
Journal:  Biomacromolecules       Date:  2020-08-20       Impact factor: 6.988

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