Literature DB >> 16366648

Triangular halogen trimers. A DFT study of the structure, cooperativity, and vibrational properties.

Yunxiang Lu1, Jianwei Zou, Hongqing Wang, Qingsen Yu, Huaxin Zhang, Yongjun Jiang.   

Abstract

Triangular halogen trimers (RX)3, where X = Br, I and R represents H, H3C, H2FC, HF2C, F3C, CH2=CH, CH[triple bond]C, and Ph, have been investigated using the density functional theory in the Perdew, Burke, and Ernzerhof method. We report herein the optimized geometries of the stable structures, their vibrational frequencies, and binding energies with the two- and three-body terms. All trimer structures possess a cyclic array of halogen atoms in the type II approach by virtue of the nonspherical atomic charge distribution around the halogens. The Br...Br interactions in trimers are very weak, whereas the I...I interactions in trimers are relatively stronger. While all bromine trimers and most of iodine trimers are predicted to be noncooperative, three of iodine trimers show weak cooperativity. The analysis of vibration modes reveals that all halogen trimers exhibit no especially remarkable frequency shifts. It is also shown that the electrostatic contribution plays a major role in the halogen...halogen interactions in halogen trimers. In contrast to bromine trimers, the relative contribution of charge-transfer component to the halogen...halogen interactions becomes more important for iodine trimers.

Entities:  

Year:  2005        PMID: 16366648     DOI: 10.1021/jp0547360

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  7 in total

1.  A systematical comparison of DFT methods in reproducing the interaction energies of halide series with protein moieties.

Authors:  Xiuhong Liu; Peng Zhou; Zhicai Shang
Journal:  J Mol Model       Date:  2011-09-09       Impact factor: 1.810

2.  Theoretical study of the triangular bonding complex formed by carbon tetrabromide, a halide, and a solvent molecule in the gas phase.

Authors:  Xiao Ran Zhao; Yu Jie Wu; Juan Han; Qian Jin Shen; Wei Jun Jin
Journal:  J Mol Model       Date:  2012-08-14       Impact factor: 1.810

3.  Supramolecular amplification of amyloid self-assembly by iodination.

Authors:  Arianna Bertolani; Lisa Pirrie; Loic Stefan; Nikolay Houbenov; Johannes S Haataja; Luca Catalano; Giancarlo Terraneo; Gabriele Giancane; Ludovico Valli; Roberto Milani; Olli Ikkala; Giuseppe Resnati; Pierangelo Metrangolo
Journal:  Nat Commun       Date:  2015-06-30       Impact factor: 14.919

4.  Lack of Cooperativity in the Triangular X3 Halogen-Bonded Synthon?

Authors:  Justyna Dominikowska; Agnieszka J Rybarczyk-Pirek; Célia Fonseca Guerra
Journal:  Cryst Growth Des       Date:  2020-12-16       Impact factor: 4.076

5.  σ-Hole and LP-Hole Interactions of Pnicogen···Pnicogen Homodimers under the External Electric Field Effect: A Quantum Mechanical Study.

Authors:  Mahmoud A A Ibrahim; Nayra A M Moussa; Sherif M A Saad; Muhammad Naeem Ahmed; Ahmed M Shawky; Mahmoud E S Soliman; Gamal A H Mekhemer; Al-Shimaa S M Rady
Journal:  ACS Omega       Date:  2022-03-22

Review 6.  The Halogen Bond.

Authors:  Gabriella Cavallo; Pierangelo Metrangolo; Roberto Milani; Tullio Pilati; Arri Priimagi; Giuseppe Resnati; Giancarlo Terraneo
Journal:  Chem Rev       Date:  2016-01-26       Impact factor: 60.622

7.  On the Potentiality of X-T-X3 Compounds (T = C, Si, and Ge, and X = F, Cl, and Br) as Tetrel- and Halogen-Bond Donors.

Authors:  Mahmoud A A Ibrahim; Nayra A M Moussa; Mahmoud E S Soliman; Mahmoud F Moustafa; Jabir H Al-Fahemi; H R Abd El-Mageed
Journal:  ACS Omega       Date:  2021-07-16
  7 in total

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