Literature DB >> 16356725

Atomic level architecture of group I introns revealed.

Quentin Vicens1, Thomas R Cech.   

Abstract

Twenty-two years after their discovery as ribozymes, the self-splicing group I introns are finally disclosing their architecture at the atomic level. The crystal structures of three group I introns solved at moderately high resolution (3.1-3.8A) reveal a remarkably conserved catalytic core bound to the metal ions required for activity. The structure of the core is stabilized by an intron-specific set of long-range interactions that involves peripheral elements. Group I intron structures thus provide much awaited and extremely valuable snapshots of how these ribozymes coordinate substrate binding and catalysis.

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Year:  2005        PMID: 16356725     DOI: 10.1016/j.tibs.2005.11.008

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN: 0968-0004            Impact factor:   13.807


  71 in total

1.  Nonhierarchical ribonucleoprotein assembly suggests a strain-propagation model for protein-facilitated RNA folding.

Authors:  Caia D S Duncan; Kevin M Weeks
Journal:  Biochemistry       Date:  2010-07-06       Impact factor: 3.162

2.  Deleterious effect of the Qo inhibitor compound resistance-conferring mutation G143A in the intron-containing cytochrome b gene and mechanisms for bypassing it.

Authors:  Cindy Vallières; Martin Trouillard; Geneviève Dujardin; Brigitte Meunier
Journal:  Appl Environ Microbiol       Date:  2011-01-28       Impact factor: 4.792

Review 3.  Recognition of S-adenosylmethionine by riboswitches.

Authors:  Robert T Batey
Journal:  Wiley Interdiscip Rev RNA       Date:  2011-01-12       Impact factor: 9.957

4.  A rearrangement of the guanosine-binding site establishes an extended network of functional interactions in the Tetrahymena group I ribozyme active site.

Authors:  Marcello Forconi; Raghuvir N Sengupta; Joseph A Piccirilli; Daniel Herschlag
Journal:  Biochemistry       Date:  2010-03-30       Impact factor: 3.162

5.  Rare group I intron with insertion sequence element in a bacterial ribonucleotide reductase gene.

Authors:  Qing Meng; Yi Zhang; Xiang-Qin Liu
Journal:  J Bacteriol       Date:  2006-12-15       Impact factor: 3.490

6.  Comparison of crystal structure interactions and thermodynamics for stabilizing mutations in the Tetrahymena ribozyme.

Authors:  Feng Guo; Anne R Gooding; Thomas R Cech
Journal:  RNA       Date:  2006-01-23       Impact factor: 4.942

7.  A triple helix within a pseudoknot is a conserved and essential element of telomerase RNA.

Authors:  Kinneret Shefer; Yogev Brown; Valentin Gorkovoy; Tamar Nussbaum; Nikolai B Ulyanov; Yehuda Tzfati
Journal:  Mol Cell Biol       Date:  2007-01-08       Impact factor: 4.272

8.  Thermodynamics and kinetics of RNA tertiary structure formation in the junctionless hairpin ribozyme.

Authors:  Neil A White; Charles G Hoogstraten
Journal:  Biophys Chem       Date:  2017-07-08       Impact factor: 2.352

9.  The unusual 23S rRNA gene of Coxiella burnetii: two self-splicing group I introns flank a 34-base-pair exon, and one element lacks the canonical omegaG.

Authors:  Rahul Raghavan; Scott R Miller; Linda D Hicks; Michael F Minnick
Journal:  J Bacteriol       Date:  2007-07-20       Impact factor: 3.490

Review 10.  Structural insights into RNA splicing.

Authors:  Navtej Toor; Kevin S Keating; Anna Marie Pyle
Journal:  Curr Opin Struct Biol       Date:  2009-05-13       Impact factor: 6.809

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