Literature DB >> 16356584

Retroposition of processed pseudogenes: the impact of RNA stability and translational control.

Adam Pavlicek1, Andrew J Gentles, Jan Paces, Václav Paces, Jerzy Jurka.   

Abstract

Human processed pseudogenes are copies of cellular RNAs reverse transcribed and inserted into the nuclear genome by the enzymatic machinery of L1 (LINE1) non-LTR retrotransposons. Although it is generally accepted that germline expression is crucial for the heritable retroposition of cellular mRNAs, little is known about the influences of RNA stability, mRNA quality control and compartmentalization of translation on the retroposition of processed pseudogenes. We found that frequently retroposed human mRNAs are derived from stable transcripts with translation-competent functional reading frames that are resistant to nonsense-mediated RNA decay. They are preferentially translated on free cytoplasmic ribosomes and encode soluble proteins. Our results indicate that interactions between mRNAs and L1 proteins seem to occur at free cytoplasmic ribosomes.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 16356584      PMCID: PMC1379630          DOI: 10.1016/j.tig.2005.11.005

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  42 in total

1.  Processed pseudogenes of human endogenous retroviruses generated by LINEs: their integration, stability, and distribution.

Authors:  Adam Pavlícek; Jan Paces; Daniel Elleder; Jirí Hejnar
Journal:  Genome Res       Date:  2002-03       Impact factor: 9.043

2.  Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome.

Authors:  Zhaolei Zhang; Mark Gerstein
Journal:  Genomics       Date:  2003-05       Impact factor: 5.736

3.  Hot L1s account for the bulk of retrotransposition in the human population.

Authors:  Brook Brouha; Joshua Schustak; Richard M Badge; Sheila Lutz-Prigge; Alexander H Farley; John V Moran; Haig H Kazazian
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-07       Impact factor: 11.205

4.  Length distribution of long interspersed nucleotide elements (LINEs) and processed pseudogenes of human endogenous retroviruses: implications for retrotransposition and pseudogene detection.

Authors:  Adam Pavlícek; Jan Paces; Radek Zíka; Jirí Hejnar
Journal:  Gene       Date:  2002-10-30       Impact factor: 3.688

5.  Trans mobilization of genomic DNA as a mechanism for retrotransposon-mediated exon shuffling.

Authors:  Yosuke Ejima; Lichun Yang
Journal:  Hum Mol Genet       Date:  2003-06-01       Impact factor: 6.150

6.  Decay rates of human mRNAs: correlation with functional characteristics and sequence attributes.

Authors:  Edward Yang; Erik van Nimwegen; Mihaela Zavolan; Nikolaus Rajewsky; Mark Schroeder; Marcelo Magnasco; James E Darnell
Journal:  Genome Res       Date:  2003-08       Impact factor: 9.043

7.  SCAN domain-containing 2 gene (SCAND2) is a novel nuclear protein derived from the zinc finger family by exon shuffling.

Authors:  Denis Dupuy; Véronique Guyonnet Dupérat; Benoît Arveiler
Journal:  Gene       Date:  2002-05-01       Impact factor: 3.688

Review 8.  Biology of mammalian L1 retrotransposons.

Authors:  E M Ostertag; H H Kazazian
Journal:  Annu Rev Genet       Date:  2001       Impact factor: 16.830

9.  Transduction of the human gene FAM8A1 by endogenous retrovirus during primate evolution.

Authors:  S Jamain; M Girondot; P Leroy; M Clergue; H Quach; M Fellous; T Bourgeron
Journal:  Genomics       Date:  2001-11       Impact factor: 5.736

10.  LINE-mediated retrotransposition of marked Alu sequences.

Authors:  Marie Dewannieux; Cécile Esnault; Thierry Heidmann
Journal:  Nat Genet       Date:  2003-08-03       Impact factor: 38.330

View more
  25 in total

1.  Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution.

Authors:  Deyou Zheng; Adam Frankish; Robert Baertsch; Philipp Kapranov; Alexandre Reymond; Siew Woh Choo; Yontao Lu; France Denoeud; Stylianos E Antonarakis; Michael Snyder; Yijun Ruan; Chia-Lin Wei; Thomas R Gingeras; Roderic Guigó; Jennifer Harrow; Mark B Gerstein
Journal:  Genome Res       Date:  2007-06       Impact factor: 9.043

2.  Pseudogenes: Four Decades of Discovery.

Authors:  Leonardo Salmena
Journal:  Methods Mol Biol       Date:  2021

3.  High rate of chimeric gene origination by retroposition in plant genomes.

Authors:  Wen Wang; Hongkun Zheng; Chuanzhu Fan; Jun Li; Junjie Shi; Zhengqiu Cai; Guojie Zhang; Dongyuan Liu; Jianguo Zhang; Søren Vang; Zhike Lu; Gane Ka-Shu Wong; Manyuan Long; Jun Wang
Journal:  Plant Cell       Date:  2006-07-07       Impact factor: 11.277

Review 4.  SVA retrotransposons: Evolution and genetic instability.

Authors:  Dustin C Hancks; Haig H Kazazian
Journal:  Semin Cancer Biol       Date:  2010-04-21       Impact factor: 15.707

5.  A nuclear ribosomal DNA pseudogene in triatomines opens a new research field of fundamental and applied implications in Chagas disease.

Authors:  María Angeles Zuriaga; Santiago Mas-Coma; María Dolores Bargues
Journal:  Mem Inst Oswaldo Cruz       Date:  2015-03-06       Impact factor: 2.743

6.  Frequency of intron loss correlates with processed pseudogene abundance: a novel strategy to test the reverse transcriptase model of intron loss.

Authors:  Tao Zhu; Deng-Ke Niu
Journal:  BMC Biol       Date:  2013-03-05       Impact factor: 7.431

7.  Frequent and recent retrotransposition of orthologous genes plays a role in the evolution of sperm glycolytic enzymes.

Authors:  Soumya A Vemuganti; Fernando Pardo-Manuel de Villena; Deborah A O'Brien
Journal:  BMC Genomics       Date:  2010-05-06       Impact factor: 3.969

8.  Processed pseudogenes: the 'fossilized footprints' of past gene expression.

Authors:  Ondrej Podlaha; Jianzhi Zhang
Journal:  Trends Genet       Date:  2009-09-30       Impact factor: 11.639

9.  Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes.

Authors:  Suganthi Balasubramanian; Deyou Zheng; Yuen-Jong Liu; Gang Fang; Adam Frankish; Nicholas Carriero; Rebecca Robilotto; Philip Cayting; Mark Gerstein
Journal:  Genome Biol       Date:  2009-01-05       Impact factor: 13.583

10.  Burst of young retrogenes and independent retrogene formation in mammals.

Authors:  Deng Pan; Liqing Zhang
Journal:  PLoS One       Date:  2009-03-27       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.