Literature DB >> 16352732

Mechanism of metal ion activation of the diphtheria toxin repressor DtxR.

J Alejandro D'Aquino1, Jaclyn Tetenbaum-Novatt, Andre White, Fred Berkovitch, Dagmar Ringe.   

Abstract

The diphtheria toxin repressor (DtxR) is a metal ion-activated transcriptional regulator that has been linked to the virulence of Corynebacterium diphtheriae. Structure determination has shown that there are two metal ion binding sites per repressor monomer, and site-directed mutagenesis has demonstrated that binding site 2 (primary) is essential for recognition of the target DNA repressor, leaving the role of binding site 1 (ancillary) unclear. Calorimetric techniques have demonstrated that although binding site 1 (ancillary) has high affinity for metal ion with a binding constant of 2 x 10(-7), binding site 2 (primary) is a low-affinity binding site with a binding constant of 6.3 x 10(-4). These two binding sites act in an independent fashion, and their contribution can be easily dissected by traditional mutational analysis. Our results clearly demonstrate that binding site 1 (ancillary) is the first one to be occupied during metal ion activation, playing a critical role in stabilization of the repressor. In addition, structural data obtained for the mutants Ni-DtxR(H79A,C102D), reported here, and the previously reported DtxR(H79A) have allowed us to propose a mechanism of metal activation for DtxR.

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Year:  2005        PMID: 16352732      PMCID: PMC1317899          DOI: 10.1073/pnas.0500908102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  33 in total

1.  Rapid automated molecular replacement by evolutionary search.

Authors:  C R Kissinger; D K Gehlhaar; D B Fogel
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-02

2.  Anion-coordinating residues at binding site 1 are essential for the biological activity of the diphtheria toxin repressor.

Authors:  J Goranson-Siekierke; E Pohl; W G Hol; R K Holmes
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3.  Stereochemistry of polypeptide chain configurations.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

5.  Identification of the primary metal ion-activation sites of the diphtheria tox repressor by X-ray crystallography and site-directed mutational analysis.

Authors:  X Ding; H Zeng; N Schiering; D Ringe; J R Murphy
Journal:  Nat Struct Biol       Date:  1996-04

6.  Crystal structure of a cobalt-activated diphtheria toxin repressor-DNA complex reveals a metal-binding SH3-like domain.

Authors:  E Pohl; R K Holmes; W G Hol
Journal:  J Mol Biol       Date:  1999-09-24       Impact factor: 5.469

7.  Sequence of ligand binding and structure change in the diphtheria toxin repressor upon activation by divalent transition metals.

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Journal:  Biochemistry       Date:  2005-04-19       Impact factor: 3.162

8.  Characterization of a manganese-dependent regulatory protein, TroR, from Treponema pallidum.

Authors:  J E Posey; J M Hardham; S J Norris; F C Gherardini
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-14       Impact factor: 11.205

9.  Motion of the DNA-binding domain with respect to the core of the diphtheria toxin repressor (DtxR) revealed in the crystal structures of apo- and holo-DtxR.

Authors:  E Pohl; R K Holmes; W G Hol
Journal:  J Biol Chem       Date:  1998-08-28       Impact factor: 5.157

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Authors:  X Qiu; E Pohl; R K Holmes; W G Hol
Journal:  Biochemistry       Date:  1996-09-24       Impact factor: 3.162

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  26 in total

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Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-01-26

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Review 7.  Bacterial iron detoxification at the molecular level.

Authors:  Justin M Bradley; Dimitri A Svistunenko; Michael T Wilson; Andrew M Hemmings; Geoffrey R Moore; Nick E Le Brun
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Review 8.  Allosteric control of metal-responsive transcriptional regulators in bacteria.

Authors:  Karina A Baksh; Deborah B Zamble
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9.  Characterization of the functional domains of the SloR metalloregulatory protein in Streptococcus mutans.

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10.  Physical characterization of the manganese-sensing pneumococcal surface antigen repressor from Streptococcus pneumoniae.

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