Literature DB >> 16351940

Genome sizes and chromosomes in the basal metazoan Hydra.

Helmut Zacharias1, Boris Anokhin, Konstantin Khalturin, Thomas C G Bosch.   

Abstract

Hydras belong to one of the earliest eumetazoan animal groups, but to date very little is known about their genome sizes, gene numbers, and chromosomes. Here we provide genome size estimates and corresponding karyotypes for five Hydra species. Nuclear DNA contents were assessed by slide-based Feulgen microphotometry. Hydra oligactis possesses the largest genome of 1450 Mbp, followed by similar 1 C capacities in H. carnea (1350 Mbp), H. vulgaris (1250 Mpb) and H. circumcincta (1150 Mbp). The smallest genome of 380 Mbp was determined in H. viridissima. While the number of chromosomes is identical in all five Hydra species (2n = 30), the size of the chromosomes is strictly correlated to the size of the genome, with H. viridissima having conspicuously small chromosomes. The taxonomic and evolutionary significance of the C-value and chromosomal size variation in this ancient group of metazoans as well as its impact on genomic organization and forthcoming genome projects are discussed.

Entities:  

Year:  2004        PMID: 16351940     DOI: 10.1016/j.zool.2004.04.005

Source DB:  PubMed          Journal:  Zoology (Jena)        ISSN: 0944-2006            Impact factor:   2.240


  14 in total

1.  Quantification of cell-cycle distribution and mitotic index in Hydra by flow cytometry.

Authors:  H Ulrich; A Tárnok
Journal:  Cell Prolif       Date:  2005-04       Impact factor: 6.831

2.  Foot differentiation and genomic plasticity in Hydra: lessons from the PPOD gene family.

Authors:  Stefan Thomsen; Thomas C G Bosch
Journal:  Dev Genes Evol       Date:  2006-01-10       Impact factor: 0.900

3.  The telomere repeat motif of basal Metazoa.

Authors:  Walther Traut; Monika Szczepanowski; Magda Vítková; Christian Opitz; Frantisek Marec; Jan Zrzavý
Journal:  Chromosome Res       Date:  2007-05-10       Impact factor: 5.239

4.  Phylogenies of central element proteins reveal the dynamic evolutionary history of the mammalian synaptonemal complex: ancient and recent components.

Authors:  Johanna Fraune; Céline Brochier-Armanet; Manfred Alsheimer; Ricardo Benavente
Journal:  Genetics       Date:  2013-09-11       Impact factor: 4.562

5.  Hydra meiosis reveals unexpected conservation of structural synaptonemal complex proteins across metazoans.

Authors:  Johanna Fraune; Manfred Alsheimer; Jean-Nicolas Volff; Karoline Busch; Sebastian Fraune; Thomas C G Bosch; Ricardo Benavente
Journal:  Proc Natl Acad Sci U S A       Date:  2012-09-24       Impact factor: 11.205

6.  Deep sequencing reveals unique small RNA repertoire that is regulated during head regeneration in Hydra magnipapillata.

Authors:  Srikar Krishna; Aparna Nair; Sirisha Cheedipudi; Deepak Poduval; Jyotsna Dhawan; Dasaradhi Palakodeti; Yashoda Ghanekar
Journal:  Nucleic Acids Res       Date:  2012-11-19       Impact factor: 16.971

7.  The dynamic genome of Hydra.

Authors:  Jarrod A Chapman; Ewen F Kirkness; Oleg Simakov; Steven E Hampson; Therese Mitros; Thomas Weinmaier; Thomas Rattei; Prakash G Balasubramanian; Jon Borman; Dana Busam; Kathryn Disbennett; Cynthia Pfannkoch; Nadezhda Sumin; Granger G Sutton; Lakshmi Devi Viswanathan; Brian Walenz; David M Goodstein; Uffe Hellsten; Takeshi Kawashima; Simon E Prochnik; Nicholas H Putnam; Shengquiang Shu; Bruce Blumberg; Catherine E Dana; Lydia Gee; Dennis F Kibler; Lee Law; Dirk Lindgens; Daniel E Martinez; Jisong Peng; Philip A Wigge; Bianca Bertulat; Corina Guder; Yukio Nakamura; Suat Ozbek; Hiroshi Watanabe; Konstantin Khalturin; Georg Hemmrich; André Franke; René Augustin; Sebastian Fraune; Eisuke Hayakawa; Shiho Hayakawa; Mamiko Hirose; Jung Shan Hwang; Kazuho Ikeo; Chiemi Nishimiya-Fujisawa; Atshushi Ogura; Toshio Takahashi; Patrick R H Steinmetz; Xiaoming Zhang; Roland Aufschnaiter; Marie-Kristin Eder; Anne-Kathrin Gorny; Willi Salvenmoser; Alysha M Heimberg; Benjamin M Wheeler; Kevin J Peterson; Angelika Böttger; Patrick Tischler; Alexander Wolf; Takashi Gojobori; Karin A Remington; Robert L Strausberg; J Craig Venter; Ulrich Technau; Bert Hobmayer; Thomas C G Bosch; Thomas W Holstein; Toshitaka Fujisawa; Hans R Bode; Charles N David; Daniel S Rokhsar; Robert E Steele
Journal:  Nature       Date:  2010-03-14       Impact factor: 49.962

Review 8.  A genomic view of 500 million years of cnidarian evolution.

Authors:  Robert E Steele; Charles N David; Ulrich Technau
Journal:  Trends Genet       Date:  2010-11-01       Impact factor: 11.639

Review 9.  Epigenetic Regulation in Hydra: Conserved and Divergent Roles.

Authors:  Anirudh Pillai; Akhila Gungi; Puli Chandramouli Reddy; Sanjeev Galande
Journal:  Front Cell Dev Biol       Date:  2021-05-10

10.  Origin of exon skipping-rich transcriptomes in animals driven by evolution of gene architecture.

Authors:  Xavier Grau-Bové; Iñaki Ruiz-Trillo; Manuel Irimia
Journal:  Genome Biol       Date:  2018-09-17       Impact factor: 13.583

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