Literature DB >> 16348887

Abundance of Virus-Sized Non-DNase-Digestible DNA (Coated DNA) in Eutrophic Seawater.

A Maruyama1, M Oda, T Higashihara.   

Abstract

Total DNA concentration in 0.2-mum-pore-size Nuclepore filter filtrates (<0.2-mum fraction) of Tokyo Bay water was estimated to be 9 to 19 ng/ml by an immunochemical quantification method. Almost 90% of the DNA in the <0.2-mum fraction was found in the size fractions larger than 3.0 x 10 Da and 0.03 mum, and most was not susceptible to DNase digestion, that is, consisted of non-DNase-digestible DNA (coated DNA). A significant amount of DNA was obtained from the <0.2-mum fraction of the seawater by three different methods: polyethylene glycol precipitation, direct ethanol precipitation, and ultrafilter concentration. Gel electrophoresis analysis of the isolated DNAs showed that they consisted mainly of coated DNAs with a similar molecular sizes (20 to 30 kb [1.3 x 10 to 2.0 x 10 Da). The abundance of the ultramicron virus-sized coated DNA in natural seawater suggests that these DNA-rich particles can be attributed to marine DNA virus assemblages and that they may be a significant phosphorus reservoir in the environment.

Entities:  

Year:  1993        PMID: 16348887      PMCID: PMC202179          DOI: 10.1128/aem.59.3.712-717.1993

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  17 in total

1.  Microcultural study of bacterial size changes and microcolony and ultramicrocolony formation by heterotrophic bacteria in seawater.

Authors:  F Torrella; R Y Morita
Journal:  Appl Environ Microbiol       Date:  1981-02       Impact factor: 4.792

2.  Isolation and characterization of ultramicrobacteria from a gulf coast estuary.

Authors:  M T Macdonell; M A Hood
Journal:  Appl Environ Microbiol       Date:  1982-03       Impact factor: 4.792

3.  Particulate DNA in smoker fluids: evidence for existence of microbial populations in hot hydrothermal systems.

Authors:  W L Straube; J W Deming; C C Somerville; R R Colwell; J A Baross
Journal:  Appl Environ Microbiol       Date:  1990-05       Impact factor: 4.792

4.  Adsorption of plasmid DNA to mineral surfaces and protection against DNase I.

Authors:  G Romanowski; M G Lorenz; W Wackernagel
Journal:  Appl Environ Microbiol       Date:  1991-04       Impact factor: 4.792

5.  Enumeration and biomass estimation of planktonic bacteria and viruses by transmission electron microscopy.

Authors:  K Y Børsheim; G Bratbak; M Heldal
Journal:  Appl Environ Microbiol       Date:  1990-02       Impact factor: 4.792

6.  Seasonal and Diel Variability in Dissolved DNA and in Microbial Biomass and Activity in a Subtropical Estuary.

Authors:  John H Paul; Mary F Deflaun; Wade H Jeffrey; Andrew W David
Journal:  Appl Environ Microbiol       Date:  1988-03       Impact factor: 4.792

7.  High abundance of viruses found in aquatic environments.

Authors:  O Bergh; K Y Børsheim; G Bratbak; M Heldal
Journal:  Nature       Date:  1989-08-10       Impact factor: 49.962

8.  Rapid bacteriophage sedimentation in the presence of polyethylene glycol and its application to large-scale virus purification.

Authors:  K R Yamamoto; B M Alberts; R Benzinger; L Lawhorne; G Treiber
Journal:  Virology       Date:  1970-03       Impact factor: 3.616

9.  Dynamics of extracellular DNA in the marine environment.

Authors:  J H Paul; W H Jeffrey; M F DeFlaun
Journal:  Appl Environ Microbiol       Date:  1987-01       Impact factor: 4.792

10.  Concentration of viruses and dissolved DNA from aquatic environments by vortex flow filtration.

Authors:  J H Paul; S C Jiang; J B Rose
Journal:  Appl Environ Microbiol       Date:  1991-08       Impact factor: 4.792

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  12 in total

Review 1.  Virioplankton: viruses in aquatic ecosystems.

Authors:  K E Wommack; R R Colwell
Journal:  Microbiol Mol Biol Rev       Date:  2000-03       Impact factor: 11.056

2.  A comparison of methods for counting viruses in aquatic systems.

Authors:  Y Bettarel; T Sime-Ngando; C Amblard; H Laveran
Journal:  Appl Environ Microbiol       Date:  2000-06       Impact factor: 4.792

3.  Simultaneous direct counting of total and specific microbial cells in seawater, using a deep-sea microbe as target.

Authors:  A Maruyama; M Sunamura
Journal:  Appl Environ Microbiol       Date:  2000-05       Impact factor: 4.792

4.  Distribution of Viruses and Dissolved DNA along a Coastal Trophic Gradient in the Northern Adriatic Sea.

Authors:  M G Weinbauer; D Fuks; P Peduzzi
Journal:  Appl Environ Microbiol       Date:  1993-12       Impact factor: 4.792

5.  Viral contribution to dissolved DNA in the marine environment as determined by differential centrifugation and kingdom probing.

Authors:  S C Jiang; J H Paul
Journal:  Appl Environ Microbiol       Date:  1995-01       Impact factor: 4.792

6.  Diel, seasonal, and depth-related variability of viruses and dissolved DNA in the northern Adriatic Sea.

Authors:  M G Weinbauer; D Fuks; S Puskaric; P Peduzzi
Journal:  Microb Ecol       Date:  1995-07       Impact factor: 4.552

7.  Viruses and the microbial loop.

Authors:  G Bratbak; F Thingstad; M Heldal
Journal:  Microb Ecol       Date:  1994-09       Impact factor: 4.552

8.  Utilization of dissolved nitrogen by heterotrophic bacterioplankton: a comparison of three ecosystems.

Authors:  N Kroer; N O Jørgensen; R B Coffin
Journal:  Appl Environ Microbiol       Date:  1994-11       Impact factor: 4.792

9.  Population dynamics of chesapeake bay virioplankton: total-community analysis by pulsed-field gel electrophoresis

Authors: 
Journal:  Appl Environ Microbiol       Date:  1999-01       Impact factor: 4.792

10.  Counting viruses and bacteria in photosynthetic microbial mats.

Authors:  Cátia Carreira; Marc Staal; Mathias Middelboe; Corina P D Brussaard
Journal:  Appl Environ Microbiol       Date:  2015-01-16       Impact factor: 4.792

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