Literature DB >> 16347966

Diffusion of the Interspecies Electron Carriers H(2) and Formate in Methanogenic Ecosystems and Its Implications in the Measurement of K(m) for H(2) or Formate Uptake.

D R Boone1, R L Johnson, Y Liu.   

Abstract

We calculated the potential H(2) and formate diffusion between microbes and found that at H(2) concentrations commonly found in nature, H(2) could not diffuse rapidly enough to dispersed methanogenic cells to account for the rate of methane synthesis but formate could. Our calculations were based on individual organisms dispersed in the medium, as supported by microscopic observations of butyrate-degrading cocultures. We isolated an axenic culture of Syntrophomonas wolfei and cultivated it on butyrate in syntrophic coculture with Methanobacterium formicicum; during growth the H(2) concentration was 63 nM (10.6 Pa). S. wolfei contained formate dehydrogenase activity (as does M. formicicum), which would allow interspecies formate transfer in that coculture. Thus, interspecies formate transfer may be the predominant mechanism of syntrophy. Our diffusion calculations also indicated that H(2) concentration at the cell surface of H(2)-consuming organisms was low but increased to approximately the bulk-fluid concentration at a distance of about 10 mum from the surface. Thus, routine estimation of kinetic parameters would greatly overestimate the K(m) for H(2) or formate.

Entities:  

Year:  1989        PMID: 16347966      PMCID: PMC202943          DOI: 10.1128/aem.55.7.1735-1741.1989

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  26 in total

1.  Formate dissimilation and methane production in bovine rumen contents.

Authors:  E J CARROLL; R E HUNGATE
Journal:  Arch Biochem Biophys       Date:  1955-06       Impact factor: 4.013

2.  Minimum threshold for hydrogen metabolism in methanogenic bacteria.

Authors:  D R Lovley
Journal:  Appl Environ Microbiol       Date:  1985-06       Impact factor: 4.792

3.  Metabolic Activity of Fatty Acid-Oxidizing Bacteria and the Contribution of Acetate, Propionate, Butyrate, and CO(2) to Methanogenesis in Cattle Waste at 40 and 60 degrees C.

Authors:  R I Mackie; M P Bryant
Journal:  Appl Environ Microbiol       Date:  1981-06       Impact factor: 4.792

4.  Mixed-culture fermentor for simulating methanogenic digestors.

Authors:  D R Boone
Journal:  Appl Environ Microbiol       Date:  1984-07       Impact factor: 4.792

5.  Kinetics of butyrate, acetate, and hydrogen metabolism in a thermophilic, anaerobic, butyrate-degrading triculture.

Authors:  B K Ahring; P Westermann
Journal:  Appl Environ Microbiol       Date:  1987-02       Impact factor: 4.792

6.  Propionate exchange reactions in methanogenic ecosystems.

Authors:  D R Boone
Journal:  Appl Environ Microbiol       Date:  1984-10       Impact factor: 4.792

Review 7.  Methanogens: reevaluation of a unique biological group.

Authors:  W E Balch; G E Fox; L J Magrum; C R Woese; R S Wolfe
Journal:  Microbiol Rev       Date:  1979-06

8.  Methanobacillus omelianskii, a symbiotic association of two species of bacteria.

Authors:  M P Bryant; E A Wolin; M J Wolin; R S Wolfe
Journal:  Arch Mikrobiol       Date:  1967

9.  Studies on an acetate-fermenting strain of Methanosarcina.

Authors:  R A Mah; M R Smith; L Baresi
Journal:  Appl Environ Microbiol       Date:  1978-06       Impact factor: 4.792

10.  Kinetic parameters and relative turnovers of some important catabolic reactions in digesting sludge.

Authors:  H F Kaspar; K Wuhrmann
Journal:  Appl Environ Microbiol       Date:  1978-07       Impact factor: 4.792

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  106 in total

1.  Sequence versus structure for the direct detection of 16S rRNA on planar oligonucleotide microarrays.

Authors:  Darrell P Chandler; Gregory J Newton; Jonathan A Small; Don S Daly
Journal:  Appl Environ Microbiol       Date:  2003-05       Impact factor: 4.792

2.  Linkage of high rates of sulfate reduction in Yellowstone hot springs to unique sequence types in the dissimilatory sulfate respiration pathway.

Authors:  Susan Fishbain; Jesse G Dillon; Heidi L Gough; David A Stahl
Journal:  Appl Environ Microbiol       Date:  2003-06       Impact factor: 4.792

3.  Automated purification and suspension array detection of 16S rRNA from soil and sediment extracts by using tunable surface microparticles.

Authors:  Darrell P Chandler; Ann E Jarrell
Journal:  Appl Environ Microbiol       Date:  2004-05       Impact factor: 4.792

4.  Effects of trace element concentrations on culturing thermophiles.

Authors:  D R Meyer-Dombard; E L Shock; J P Amend
Journal:  Extremophiles       Date:  2012-02-04       Impact factor: 2.395

5.  Mercury resistance and mercuric reductase activities and expression among chemotrophic thermophilic Aquificae.

Authors:  Zachary Freedman; Chengsheng Zhu; Tamar Barkay
Journal:  Appl Environ Microbiol       Date:  2012-07-06       Impact factor: 4.792

6.  Growth of methanogens on a Mars soil simulant.

Authors:  Timothy A Kral; Curtis R Bekkum; Christopher P McKay
Journal:  Orig Life Evol Biosph       Date:  2004-12       Impact factor: 1.950

7.  Simulating the contribution of coaggregation to interspecies hydrogen fluxes in syntrophic methanogenic consortia.

Authors:  Shun'ichi Ishii; Tomoyuki Kosaka; Yasuaki Hotta; Kazuya Watanabe
Journal:  Appl Environ Microbiol       Date:  2006-07       Impact factor: 4.792

8.  Survival of methanogenic archaea from Siberian permafrost under simulated Martian thermal conditions.

Authors:  Daria Morozova; Diedrich Möhlmann; Dirk Wagner
Journal:  Orig Life Evol Biosph       Date:  2006-12-12       Impact factor: 1.950

9.  Continuous enrichment culturing of thermophiles under sulfate and nitrate-reducing conditions and at deep-sea hydrostatic pressures.

Authors:  J L Houghton; W E Seyfried; A B Banta; A-L Reysenbach
Journal:  Extremophiles       Date:  2007-01-13       Impact factor: 2.395

10.  Potassium extrusion by the moderately halophilic and alkaliphilic methanogen methanolobus taylorii GS-16 and homeostasis of cytosolic pH.

Authors:  S Ni; J E Boone; D R Boone
Journal:  J Bacteriol       Date:  1994-12       Impact factor: 3.490

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