Literature DB >> 16347567

A Positive Strain Identification Method for Rhizobium meliloti.

R Wheatcroft1, R J Watson.   

Abstract

About 80% of Rhizobium meliloti strains contain 1 to 11 copies of insertion sequence ISRm1 in their genomes (R. Wheatcroft and R. J. Watson, J. Gen. Microbiol. 134:113-121, 1988). Hybridization to separated genomic DNA fragments with an ISRm1-specific probe produces patterns of hybridization bands which are distinctive for each strain. These patterns can be compared between strains to prove or disprove common identity. In most cases relatedness can be inferred despite phenotypic differences or minor genomic alterations.

Entities:  

Year:  1988        PMID： 16347567      PMCID： PMC202494          DOI： 10.1128/aem.54.2.574-576.1988

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  10 in total

1.  Identification of lotus rhizobia by direct DNA hybridization of crushed root nodules.

Authors:  J E Cooper; A J Bjourson; J K Thompson
Journal:  Appl Environ Microbiol       Date:  1987-07       Impact factor: 4.792

2.  Detection of specific sequences among DNA fragments separated by gel electrophoresis.

Authors:  E M Southern
Journal:  J Mol Biol       Date:  1975-11-05       Impact factor: 5.469

3.  The arrangement of simian virus 40 sequences in the DNA of transformed cells.

Authors:  M Botchan; W Topp; J Sambrook
Journal:  Cell       Date:  1976-10       Impact factor: 41.582

4.  Use of two-dimensional polyacrylamide gel electrophoresis to identify and classify Rhizobium strains.

Authors:  G P Roberts; W T Leps; L E Silver; W J Brill
Journal:  Appl Environ Microbiol       Date:  1980-02       Impact factor: 4.792

5.  Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I.

Authors:  P W Rigby; M Dieckmann; C Rhodes; P Berg
Journal:  J Mol Biol       Date:  1977-06-15       Impact factor: 5.469

6.  Repeated sequences similar to insertion elements clustered around the nif region of the Rhizobium japonicum genome.

Authors:  K Kaluza; M Hahn; H Hennecke
Journal:  J Bacteriol       Date:  1985-05       Impact factor: 3.490

7.  R factor transfer in Rhizobium leguminosarum.

Authors:  J E Beringer
Journal:  J Gen Microbiol       Date:  1974-09

8.  Distribution and abundance of insertion sequences among natural isolates of Escherichia coli.

Authors:  S A Sawyer; D E Dykhuizen; R F DuBose; L Green; T Mutangadura-Mhlanga; D F Wolczyk; D L Hartl
Journal:  Genetics       Date:  1987-01       Impact factor: 4.562

9.  Distribution of insertion sequence ISRm1 in Rhizobium meliloti and other gram-negative bacteria.

Authors:  R Wheatcroft; R J Watson
Journal:  J Gen Microbiol       Date:  1988-01

10.  ISRm1: A Rhizobium meliloti insertion sequence that transposes preferentially into nitrogen fixation genes.

Authors:  G B Ruvkun; S R Long; H M Meade; R C van den Bos; F M Ausubel
Journal:  J Mol Appl Genet       Date:  1982
  10 in total
  16 in total

1.  Isolation of Insertion Sequence ISRLdTAL1145-1 from a Rhizobium sp. (Leucaena diversifolia) and Distribution of Homologous Sequences Identifying Cross-Inoculation Group Relationships.

Authors:  D J Rice; P Somasegaran; K Macglashan; B B Bohlool
Journal:  Appl Environ Microbiol       Date:  1994-12       Impact factor: 4.792

2.  DNA Hybridization Probe for Use in Determining Restricted Nodulation among Bradyrhizobium japonicum Serocluster 123 Field Isolates.

Authors:  M J Sadowsky; P B Cregan; H H Keyser
Journal:  Appl Environ Microbiol       Date:  1990-06       Impact factor: 4.792

3.  New Bradyrhizobium japonicum strains that possess high copy numbers of the repeated sequence RS alpha.

Authors:  K Minamisawa; T Isawa; Y Nakatsuka; N Ichikawa
Journal:  Appl Environ Microbiol       Date:  1998-05       Impact factor: 4.792

4.  Component identification of electron transport chains in curdlan-producing Agrobacterium sp. ATCC 31749 and its genome-specific prediction using comparative genome and phylogenetic trees analysis.

Authors:  Hongtao Zhang; Joao Carlos Setubal; Xiaobei Zhan; Zhiyong Zheng; Lijun Yu; Jianrong Wu; Dingqiang Chen
Journal:  J Ind Microbiol Biotechnol       Date:  2010-08-22       Impact factor: 3.346

5.  Identification and nucleotide sequence of Rhizobium meliloti insertion sequence ISRm3: similarity between the putative transposase encoded by ISRm3 and those encoded by Staphylococcus aureus IS256 and Thiobacillus ferrooxidans IST2.

Authors:  R Wheatcroft; S Laberge
Journal:  J Bacteriol       Date:  1991-04       Impact factor: 3.490

6.  Isolation and characterization of insertion sequence elements from gram-negative bacteria by using new broad-host-range, positive selection vectors.

Authors:  R Simon; B Hötte; B Klauke; B Kosier
Journal:  J Bacteriol       Date:  1991-02       Impact factor: 3.490

7.  A simple RNA probe system for analysis of Listeria monocytogenes polymerase chain reaction products.

Authors:  B W Blais; L M Phillippe
Journal:  Appl Environ Microbiol       Date:  1993-09       Impact factor: 4.792

8.  The Bradyrhizobium japonicum serocluster 123 hyperreiterated DNA region, HRS1, has DNA and amino acid sequence homology to IS1380, an insertion sequence from Acetobacter pasteurianus.

Authors:  A K Judd; M J Sadowsky
Journal:  Appl Environ Microbiol       Date:  1993-05       Impact factor: 4.792

9.  Chlorobenzoate catabolic transposon Tn5271 is a composite class I element with flanking class II insertion sequences.

Authors:  C Nakatsu; J Ng; R Singh; N Straus; C Wyndham
Journal:  Proc Natl Acad Sci U S A       Date:  1991-10-01       Impact factor: 11.205

10.  Isolation and characterization of an N-methylcarbamate insecticide-degrading methylotrophic bacterium.

Authors:  E Topp; R S Hanson; D B Ringelberg; D C White; R Wheatcroft
Journal:  Appl Environ Microbiol       Date:  1993-10       Impact factor: 4.792
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