Literature DB >> 16348992

Isolation of Typical Marine Bacteria by Dilution Culture: Growth, Maintenance, and Characteristics of Isolates under Laboratory Conditions.

F Schut1, E J de Vries, J C Gottschal, B R Robertson, W Harder, R A Prins, D K Button.   

Abstract

Marine bacteria in Resurrection Bay near Seward, Alaska, and in the central North Sea off the Dutch coast were cultured in filtered autoclaved seawater following dilution to extinction. The populations present before dilution varied from 0.11 x 10 to 1.07 x 10 cells per liter. The mean cell volume varied between 0.042 and 0.074 mum, and the mean apparent DNA content of the cells ranged from 2.5 to 4.7 fg of DNA per cell. All three parameters were determined by high-resolution flow cytometry. All 37 strains that were obtained from very high dilutions of Resurrection Bay and North Sea samples represented facultatively oligotrophic bacteria. However, 15 of these isolates were eventually obtained from dilution cultures that could initially be cultured only on very low-nutrient media and that could initially not form visible colonies on any of the agar media tested, indicating that these cultures contained obligately oligotrophic bacteria. It was concluded that the cells in these 15 dilution cultures had adapted to growth under laboratory conditions after several months of nutrient deprivation prior to isolation. From the North Sea experiment, it was concluded that the contribution of facultative oligotrophs and eutrophs to the total population was less than 1% and that while more than half of the population behaved as obligately oligotrophic bacteria upon first cultivation in the dilution culture media, around 50% could not be cultured at all. During one of the Resurrection Bay experiments, 53% of the dilution cultures obtained from samples diluted more than 2.5 x 10 times consisted of such obligate oligotrophs. These cultures invariably harbored a small rod-shaped bacterium with a mean cell volume of 0.05 to 0.06 mum and an apparent DNA content of 1 to 1.5 fg per cell. This cell type had the dimensions of ultramicrobacteria. Isolates of these ultramicrobacterial cultures that were eventually obtained on relatively high-nutrient agar plates were, with respect to cell volume and apparent DNA content, identical to the cells in the initially obligately oligotrophic bacterial dilution culture. Determination of kinetic parameters from one of these small rod-shaped strains revealed a high specific affinity for the uptake of mixed amino acids (a degrees (A), 1,860 liters/g of cells per h), but not for glucose or alanine as the sole source of carbon and energy (a degrees (A), +/- 200 liters/g of cells per h). The ultramicrobial strains obtained are potentially a very important part of picoplankton biomass in the areas investigated.

Entities:  

Year:  1993        PMID: 16348992      PMCID: PMC182250          DOI: 10.1128/aem.59.7.2150-2160.1993

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  43 in total

Review 1.  Substrate capturing and growth in various ecosystems.

Authors:  J C Gottschal
Journal:  Soc Appl Bacteriol Symp Ser       Date:  1992

2.  Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing.

Authors:  T M Schmidt; E F DeLong; N R Pace
Journal:  J Bacteriol       Date:  1991-07       Impact factor: 3.490

3.  Amino Acid assimilation and electron transport system activity in attached and free-living marine bacteria.

Authors:  J J Bright; M Fletcher
Journal:  Appl Environ Microbiol       Date:  1983-03       Impact factor: 4.792

4.  Phylogenetic analysis of a natural marine bacterioplankton population by rRNA gene cloning and sequencing.

Authors:  T B Britschgi; S J Giovannoni
Journal:  Appl Environ Microbiol       Date:  1991-06       Impact factor: 4.792

5.  Characterization of neutral amino acid transport in a marine pseudomonad.

Authors:  J E Fein; R A MacLeod
Journal:  J Bacteriol       Date:  1975-12       Impact factor: 3.490

6.  Use of a fluorescent redox probe for direct visualization of actively respiring bacteria.

Authors:  G G Rodriguez; D Phipps; K Ishiguro; H F Ridgway
Journal:  Appl Environ Microbiol       Date:  1992-06       Impact factor: 4.792

7.  Multiple-carbon-source-limited growth kinetics of a marine coryneform bacterium.

Authors:  A T Law; D K Button
Journal:  J Bacteriol       Date:  1977-01       Impact factor: 3.490

8.  Formation of nonculturable Vibrio vulnificus cells and its relationship to the starvation state.

Authors:  J D Oliver; L Nilsson; S Kjelleberg
Journal:  Appl Environ Microbiol       Date:  1991-09       Impact factor: 4.792

9.  Simultaneous determination of the total number of aquatic bacteria and the number thereof involved in respiration.

Authors:  R Zimmermann; R Iturriaga; J Becker-Birck
Journal:  Appl Environ Microbiol       Date:  1978-12       Impact factor: 4.792

10.  Autoradiography and epifluorescence microscopy combined for the determination of number and spectrum of actively metabolizing bacteria in natural water.

Authors:  L A Meyer-Reil
Journal:  Appl Environ Microbiol       Date:  1978-09       Impact factor: 4.792

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  88 in total

1.  A study of deep-sea natural microbial populations and barophilic pure cultures using a high-pressure chemostat.

Authors:  C O Wirsen; S J Molyneaux
Journal:  Appl Environ Microbiol       Date:  1999-12       Impact factor: 4.792

2.  Determination of total protein content of bacterial cells by SYPRO staining and flow cytometry.

Authors:  M V Zubkov; B M Fuchs; H Eilers; P H Burkill; R Amann
Journal:  Appl Environ Microbiol       Date:  1999-07       Impact factor: 4.792

3.  Cloning and sequencing of the gene encoding an aldehyde dehydrogenase that is induced by growing Alteromonas sp. Strain KE10 in a low concentration of organic nutrients.

Authors:  T Maeda; I Yoshinaga; T Shiba; M Murakami; A Wada; Y Ishida
Journal:  Appl Environ Microbiol       Date:  2000-05       Impact factor: 4.792

4.  Sphingomonas alaskensis strain AFO1, an abundant oligotrophic ultramicrobacterium from the North Pacific.

Authors:  M Eguchi; M Ostrowski; F Fegatella; J Bowman; D Nichols; T Nishino; R Cavicchioli
Journal:  Appl Environ Microbiol       Date:  2001-11       Impact factor: 4.792

5.  Growth patterns of two marine isolates: adaptations to substrate patchiness?

Authors:  A Pernthaler; J Pernthaler; H Eilers; R Amann
Journal:  Appl Environ Microbiol       Date:  2001-09       Impact factor: 4.792

Review 6.  Search and discovery strategies for biotechnology: the paradigm shift.

Authors:  A T Bull; A C Ward; M Goodfellow
Journal:  Microbiol Mol Biol Rev       Date:  2000-09       Impact factor: 11.056

Review 7.  Microbial biodiversity: approaches to experimental design and hypothesis testing in primary scientific literature from 1975 to 1999.

Authors:  Cindy E Morris; Marc Bardin; Odile Berge; Pascale Frey-Klett; Nathalie Fromin; Hélène Girardin; Marie-Hélène Guinebretière; Philippe Lebaron; Jean M Thiéry; Marc Troussellier
Journal:  Microbiol Mol Biol Rev       Date:  2002-12       Impact factor: 11.056

8.  Cultivation and growth characteristics of a diverse group of oligotrophic marine Gammaproteobacteria.

Authors:  Jang-Cheon Cho; Stephen J Giovannoni
Journal:  Appl Environ Microbiol       Date:  2004-01       Impact factor: 4.792

9.  High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates.

Authors:  Stephanie A Connon; Stephen J Giovannoni
Journal:  Appl Environ Microbiol       Date:  2002-08       Impact factor: 4.792

10.  Statistical approaches for estimating actinobacterial diversity in marine sediments.

Authors:  James E M Stach; Luis A Maldonado; Douglas G Masson; Alan C Ward; Michael Goodfellow; Alan T Bull
Journal:  Appl Environ Microbiol       Date:  2003-10       Impact factor: 4.792

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