Literature DB >> 16344949

Modeling study of the influences of the aromatic transitions and the local environment on the far-UV rotational strengths in TEM-1 beta-lactamase.

Christo Christov1, Frederik Tielens, Miroslav Mirazchiiski.   

Abstract

Rotational strengths in the far-UV of TEM-1 beta-lactamase have been investigated with two theoretical models based on the matrix method. The first model excludes, and a second includes, effects of the local electrostatic interactions on the chromophore energies. Special attention is given to the contributions of the aromatic side-chain chromophores, and the mechanisms of generation of rotational strengths are analyzed. The sensitivity of the computational models with respect to the structural changes of the protein are discussed. [Figure: see text].

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Year:  2005        PMID: 16344949     DOI: 10.1007/s00894-005-0061-3

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  18 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

Review 2.  What are the dielectric "constants" of proteins and how to validate electrostatic models?

Authors:  C N Schutz; A Warshel
Journal:  Proteins       Date:  2001-09-01

3.  Calculations of protein circular dichroism from first principles.

Authors:  David M Rogers; Jonathan D Hirst
Journal:  Chirality       Date:  2004-05-05       Impact factor: 2.437

4.  CRITIQUE OF THE THEORY OF OPTICAL ACTIVITY OF HELICAL POLYMERS.

Authors:  W Moffitt; D D Fitts; J G Kirkwood
Journal:  Proc Natl Acad Sci U S A       Date:  1957-08-15       Impact factor: 11.205

5.  Crystal structure of an acylation transition-state analog of the TEM-1 beta-lactamase. Mechanistic implications for class A beta-lactamases.

Authors:  L Maveyraud; R F Pratt; J P Samama
Journal:  Biochemistry       Date:  1998-02-24       Impact factor: 3.162

Review 6.  Classical electrostatics in biology and chemistry.

Authors:  B Honig; A Nicholls
Journal:  Science       Date:  1995-05-26       Impact factor: 47.728

7.  Calculations of the CD spectrum of bovine pancreatic ribonuclease.

Authors:  G Kurapkat; P Krüger; A Wollmer; J Fleischhauer; B Kramer; E Zobel; A Koslowski; H Botterweck; R W Woody
Journal:  Biopolymers       Date:  1997-03       Impact factor: 2.505

8.  Contributions of tryptophan side chains to the far-ultraviolet circular dichroism of proteins.

Authors:  R W Woody
Journal:  Eur Biophys J       Date:  1994       Impact factor: 1.733

9.  Crystal structure of Escherichia coli TEM1 beta-lactamase at 1.8 A resolution.

Authors:  C Jelsch; L Mourey; J M Masson; J P Samama
Journal:  Proteins       Date:  1993-08

10.  Calculation of the circular dichroism spectrum of cyclo-(L-tyr-L-tyr) based on a molecular dynamics simulation.

Authors:  J Fleischhauer; J Grötzinger; B Kramer; P Krüger; A Wollmer; R W Woody; E Zobel
Journal:  Biophys Chem       Date:  1994-03       Impact factor: 2.352

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  1 in total

1.  Conformational effects on the circular dichroism of Human Carbonic Anhydrase II: a multilevel computational study.

Authors:  Tatyana G Karabencheva-Christova; Uno Carlsson; Kia Balali-Mood; Gary W Black; Christo Z Christov
Journal:  PLoS One       Date:  2013-02-25       Impact factor: 3.240

  1 in total

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