Literature DB >> 16342959

Guanidine derivatives rescue the Arg418Ala mutation of Tritrichomonas foetus IMP dehydrogenase.

Yollete V Guillén Schlippe1, Lizbeth Hedstrom.   

Abstract

IMP dehydrogenase (IMPDH) catalyzes the oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5'-monophosphate (XMP) and the reduction of NAD(+). The reaction involves formation of an E-XMP covalent intermediate; hydrolysis of the E-XMP intermediate is rate-limiting and requires the enzyme to adopt a closed conformation. Arg418 appears to act as the base that activates water for the hydrolysis reaction [Guillen-Schlippe, Y. V., and Hedstrom, L. (2005) Biochemistry 44, 11700-11707]. Deprotonation of Arg418 also stabilizes the closed conformation. Here we show that guanidine derivatives rescue the activity of the Arg418Ala variant. Amines and imidazole do not rescue. The rescue reaction appears to be saturable, with the values of K(R) ranging from 40 to 400 mM. The value of k(rescue) for the best rescue agents approaches the value of k(cat) for the reaction of the wild-type enzyme. Guanidine derivatives also rescue the activity of the Arg418Ala/Tyr419Phe variant. Multiple-inhibitor experiments suggest that the guanidine derivatives do not restore the equilibrium between open and closed conformations. Therefore, rescue agents must accelerate the hydrolysis of the E-XMP intermediate. The rate of the rescue reaction increases with an increase in pH, consistent with the hypothesis that the reaction involves neutral guanidine. A solvent D(2)O isotope effect is observed at low concentrations of the rescue agent, consistent with rate-limiting transfer of a proton from water. The value of k(cat) (rescue)/K(R)(base) correlates with the pK(a) of the guanidine derivative (Bronsted coefficient beta approximately 1). These results suggest that proton transfer from water to guanidine is almost complete in the transition state.

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Year:  2005        PMID: 16342959     DOI: 10.1021/bi051603w

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  11 in total

1.  Structural determinants of inhibitor selectivity in prokaryotic IMP dehydrogenases.

Authors:  Deviprasad R Gollapalli; Iain S Macpherson; George Liechti; Suresh Kumar Gorla; Joanna B Goldberg; Lizbeth Hedstrom
Journal:  Chem Biol       Date:  2010-10-29

Review 2.  IMP dehydrogenase: structure, mechanism, and inhibition.

Authors:  Lizbeth Hedstrom
Journal:  Chem Rev       Date:  2009-07       Impact factor: 60.622

3.  Crystallization and preliminary X-ray analysis of mycophenolic acid-resistant and mycophenolic acid-sensitive forms of IMP dehydrogenase from the human fungal pathogen Cryptococcus.

Authors:  Carl A Morrow; Anna Stamp; Eugene Valkov; Bostjan Kobe; James A Fraser
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-08-28

Review 4.  The dynamic determinants of reaction specificity in the IMPDH/GMPR family of (β/α)(8) barrel enzymes.

Authors:  Lizbeth Hedstrom
Journal:  Crit Rev Biochem Mol Biol       Date:  2012-02-15       Impact factor: 8.250

5.  Functional roles in S-adenosyl-L-methionine binding and catalysis for active site residues of the thiostrepton resistance methyltransferase.

Authors:  Cullen L Myers; Emily G Kuiper; Pei C Grant; Jennifer Hernandez; Graeme L Conn; John F Honek
Journal:  FEBS Lett       Date:  2015-10-09       Impact factor: 4.124

6.  Kinetic isotope effect studies on the de novo rate of chromophore formation in fast- and slow-maturing GFP variants.

Authors:  Lauren J Pouwels; Liping Zhang; Nam H Chan; Pieter C Dorrestein; Rebekka M Wachter
Journal:  Biochemistry       Date:  2008-08-30       Impact factor: 3.162

7.  De novo GTP biosynthesis is critical for virulence of the fungal pathogen Cryptococcus neoformans.

Authors:  Carl A Morrow; Eugene Valkov; Anna Stamp; Eve W L Chow; I Russel Lee; Ania Wronski; Simon J Williams; Justine M Hill; Julianne T Djordjevic; Ulrike Kappler; Bostjan Kobe; James A Fraser
Journal:  PLoS Pathog       Date:  2012-10-11       Impact factor: 6.823

8.  Investigation of the role of Arg301 identified in the X-ray structure of phosphite dehydrogenase.

Authors:  John E Hung; Emily J Fogle; Harry D Christman; Tyler W Johannes; Huimin Zhao; William W Metcalf; Wilfred A van der Donk
Journal:  Biochemistry       Date:  2012-05-17       Impact factor: 3.162

9.  An enzymatic atavist revealed in dual pathways for water activation.

Authors:  Donghong Min; Helen R Josephine; Hongzhi Li; Clemens Lakner; Iain S MacPherson; Gavin J P Naylor; David Swofford; Lizbeth Hedstrom; Wei Yang
Journal:  PLoS Biol       Date:  2008-08-26       Impact factor: 8.029

10.  Chemical rescue and inhibition studies to determine the role of Arg301 in phosphite dehydrogenase.

Authors:  John E Hung; Emily J Fogle; Neha Garg; Jonathan R Chekan; Satish K Nair; Wilfred A van der Donk
Journal:  PLoS One       Date:  2014-01-31       Impact factor: 3.240

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