Literature DB >> 16332717

Beware of mis-assembled genomes.

Steven L Salzberg, James A Yorke.   

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Year:  2005        PMID： 16332717     DOI： 10.1093/bioinformatics/bti769

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


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  81 in total

1.  Genome assembly quality: assessment and improvement using the neutral indel model.

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2.  Assemblies: the good, the bad, the ugly.

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Review 3.  Next-generation transcriptome assembly.

Authors:  Jeffrey A Martin; Zhong Wang
Journal:  Nat Rev Genet       Date:  2011-09-07       Impact factor: 53.242

Review 4.  The Genome 10K Project: a way forward.

Authors:  Klaus-Peter Koepfli; Benedict Paten; Stephen J O'Brien
Journal:  Annu Rev Anim Biosci       Date:  2015       Impact factor: 8.923

5.  Comparing whole-genome sequencing with Sanger sequencing for spa typing of methicillin-resistant Staphylococcus aureus.

Authors:  Mette Damkjær Bartels; Andreas Petersen; Peder Worning; Jesper Boye Nielsen; Hanna Larner-Svensson; Helle Krogh Johansen; Leif Percival Andersen; Jens Otto Jarløv; Kit Boye; Anders Rhod Larsen; Henrik Westh
Journal:  J Clin Microbiol       Date:  2014-10-08       Impact factor: 5.948

6.  Assembly errors cause false tandem duplicate regions in the chicken (Gallus gallus) genome sequence.

Authors:  Qu Zhang; Niclas Backström
Journal:  Chromosoma       Date:  2013-11-10       Impact factor: 4.316

7.  Ray Meta: scalable de novo metagenome assembly and profiling.

Authors:  Sébastien Boisvert; Frédéric Raymond; Elénie Godzaridis; François Laviolette; Jacques Corbeil
Journal:  Genome Biol       Date:  2012-12-22       Impact factor: 13.583

8.  Characterization of a polymorphic IGLV gene in pigs (Sus scrofa).

Authors:  John C Schwartz; Michael P Murtaugh
Journal:  Immunogenetics       Date:  2014-06-17       Impact factor: 2.846

9.  Detection and correction of false segmental duplications caused by genome mis-assembly.

Authors:  David R Kelley; Steven L Salzberg
Journal:  Genome Biol       Date:  2010-03-10       Impact factor: 13.583

10.  SOPRA: Scaffolding algorithm for paired reads via statistical optimization.

Authors:  Adel Dayarian; Todd P Michael; Anirvan M Sengupta
Journal:  BMC Bioinformatics       Date:  2010-06-24       Impact factor: 3.169
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