Literature DB >> 16332707

BALLView: a tool for research and education in molecular modeling.

Andreas Moll1, Andreas Hildebrandt, Hans-Peter Lenhof, Oliver Kohlbacher.   

Abstract

We present BALLView, a molecular viewer and modeling tool. It combines state-of-the-art visualization capabilities with powerful modeling functionality including implementations of force field methods and continuum electrostatics models. BALLView is a versatile and extensible tool for research in structural bioinformatics and molecular modeling. Furthermore, the convenient and intuitive graphical user interface offers novice users direct access to the full functionality, rendering it ideal for teaching. Through an interface to the object-oriented scripting language Python it is easily extensible.

Mesh：

Year:  2005        PMID： 16332707     DOI： 10.1093/bioinformatics/bti818

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  15 in total

1.  Real-time ligand binding pocket database search using local surface descriptors.

Authors:  Rayan Chikhi; Lee Sael; Daisuke Kihara
Journal:  Proteins       Date:  2010-07

2.  Human SAP18 mediates assembly of a splicing regulatory multiprotein complex via its ubiquitin-like fold.

Authors:  Kusum K Singh; Steffen Erkelenz; Stephanie Rattay; Anna Katharina Dehof; Andreas Hildebrandt; Klaus Schulze-Osthoff; Heiner Schaal; Christian Schwerk
Journal:  RNA       Date:  2010-10-21       Impact factor: 4.942

3.  Plants Release Precursors of Histone Deacetylase Inhibitors to Suppress Growth of Competitors.

Authors:  Sascha Venturelli; Regina G Belz; Andreas Kämper; Alexander Berger; Kyra von Horn; André Wegner; Alexander Böcker; Gérald Zabulon; Tobias Langenecker; Oliver Kohlbacher; Fredy Barneche; Detlef Weigel; Ulrich M Lauer; Michael Bitzer; Claude Becker
Journal:  Plant Cell       Date:  2015-11-03       Impact factor: 11.277

4.  BALL--biochemical algorithms library 1.3.

Authors:  Andreas Hildebrandt; Anna Katharina Dehof; Alexander Rurainski; Andreas Bertsch; Marcel Schumann; Nora C Toussaint; Andreas Moll; Daniel Stöckel; Stefan Nickels; Sabine C Mueller; Hans-Peter Lenhof; Oliver Kohlbacher
Journal:  BMC Bioinformatics       Date:  2010-10-25       Impact factor: 3.169

Review 5.  Open source molecular modeling.

Authors:  Somayeh Pirhadi; Jocelyn Sunseri; David Ryan Koes
Journal:  J Mol Graph Model       Date:  2016-07-30       Impact factor: 2.518

6.  Temporal evolution of helix hydration in a light-gated ion channel correlates with ion conductance.

Authors:  Víctor A Lórenz-Fonfría; Christian Bamann; Tom Resler; Ramona Schlesinger; Ernst Bamberg; Joachim Heberle
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-12       Impact factor: 11.205

7.  Community-driven computational biology with Debian Linux.

Authors:  Steffen Möller; Hajo Nils Krabbenhöft; Andreas Tille; David Paleino; Alan Williams; Katy Wolstencroft; Carole Goble; Richard Holland; Dominique Belhachemi; Charles Plessy
Journal:  BMC Bioinformatics       Date:  2010-12-21       Impact factor: 3.169

8.  POPISK: T-cell reactivity prediction using support vector machines and string kernels.

Authors:  Chun-Wei Tung; Matthias Ziehm; Andreas Kämper; Oliver Kohlbacher; Shinn-Ying Ho
Journal:  BMC Bioinformatics       Date:  2011-11-15       Impact factor: 3.169

9.  New insights into the genetics of glioblastoma multiforme by familial exome sequencing.

Authors:  Christina Backes; Christian Harz; Ulrike Fischer; Jana Schmitt; Nicole Ludwig; Britt-Sabina Petersen; Sabine C Mueller; Yoo-Jin Kim; Nadine M Wolf; Hugo A Katus; Benjamin Meder; Rhoikos Furtwängler; Andre Franke; Rainer Bohle; Wolfram Henn; Norbert Graf; Andreas Keller; Eckart Meese
Journal:  Oncotarget       Date:  2015-03-20

10.  Combining structure and sequence information allows automated prediction of substrate specificities within enzyme families.

Authors:  Marc Röttig; Christian Rausch; Oliver Kohlbacher
Journal:  PLoS Comput Biol       Date:  2010-01-08       Impact factor: 4.475
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