Literature DB >> 16331953

Intrinsic conformational preferences of substituted cyclohexanes and tetrahydropyrans evaluated at the CCSD(T) complete basis set limit: implications for the anomeric effect.

Abby Jones Weldon1, Trisha L Vickrey, Gregory S Tschumper.   

Abstract

A series of MP2 and CCSD(T) computations have been carried out with correlation consistent basis sets as large as aug-cc-pV5Z to determine the intrinsic equatorial-axial conformational preference of CH(3)-, F-, OCH(3)-, and OH-substituted cyclohexane and tetrahydropyran rings. The high-accuracy relative electronic energies reported here shed new light on the intrinsic energetics of these cyclic prototypes for the anomeric effect. At the CCSD(T) complete basis set (CBS) limit, the energy of the equatorial conformation relative to the axial position (DeltaE (CBS)(CCSD(T))) is -1.75, -0.20, -0.21, and -0.56 kcal mol(-1) in methyl-, fluoro-, methoxy-, and hydroxycyclohexane, respectively, while DeltaE(CBS)(CCSD(T) is -2.83, +2.45, +1.27, and +0.86 kcal mol(-1) for 2-methyl-, 2-fluoro-, 2-methoxy-, and 2-hydroxytetrahydropyran, respectively. Note that the equatorial and axial conformers are nearly electronically isoenergetic in both fluoro- and methoxycyclohexane. For all eight cyclic species, a zero-point vibrational energy correction decreases Delta by a few tenths of a kilocalorie per mole. Relative energies obtained with popular methods and basis sets are unreliable, including Hartree-Fock theory, the B3LYP density functional, and the 6-31G and 6-311G families of split-valence basis sets. Even with the massive pentuple-zeta basis sets, the HF and B3LYP methods substantially overestimate the stability of the equatorial conformers (by as much as 0.99 and 0.73 kcal mol(-1), respectively, for 2-methoxytetrahydropyran). Only because of a consistent cancellation of errors do these popular approaches sometimes provide reasonable estimates of the anomeric effect.

Entities:  

Year:  2005        PMID: 16331953     DOI: 10.1021/jp0550311

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  5 in total

1.  The effect of electrostatic interactions on conformational equilibria of multiply substituted tetrahydropyran oxocarbenium ions.

Authors:  Michael T Yang; K A Woerpel
Journal:  J Org Chem       Date:  2009-01-16       Impact factor: 4.354

2.  Ab initio modeling of glycosyl torsions and anomeric effects in a model carbohydrate: 2-ethoxy tetrahydropyran.

Authors:  H Lee Woodcock; Damian Moran; Richard W Pastor; Alexander D MacKerell; Bernard R Brooks
Journal:  Biophys J       Date:  2007-07-01       Impact factor: 4.033

3.  Importance of ligand conformational energies in carbohydrate docking: Sorting the wheat from the chaff.

Authors:  Anita K Nivedha; Spandana Makeneni; Bethany Lachele Foley; Matthew B Tessier; Robert J Woods
Journal:  J Comput Chem       Date:  2013-12-29       Impact factor: 3.376

4.  GLYCAM06: a generalizable biomolecular force field. Carbohydrates.

Authors:  Karl N Kirschner; Austin B Yongye; Sarah M Tschampel; Jorge González-Outeiriño; Charlisa R Daniels; B Lachele Foley; Robert J Woods
Journal:  J Comput Chem       Date:  2008-03       Impact factor: 3.376

5.  An Interacting Quantum Atoms (IQA) and Relative Energy Gradient (REG) Analysis of the Anomeric Effect.

Authors:  Danish Khan; Leonardo J Duarte; Paul L A Popelier
Journal:  Molecules       Date:  2022-08-06       Impact factor: 4.927

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.