Literature DB >> 16328833

The Archaeal Concept and the World it Lives in: A Retrospective.

Carl R Woese1.   

Abstract

The present retrospective concerns the discovery and development of the archaea, the so-called 'third form of life' that no one anticipated and many did not, and still do not want. In its birth pangs, which the archaea had a plenty, the concept encountered biology unmasked; for it ran up against some of the key struts in the 20th century biological edifice. Consequently, the history of the development of the archaeal concept provides an excellent window on certain of the weaknesses in the 20th century biology paradigm, weaknesses that have now led that paradigm to a conceptual dead end. On the other hand, the archaeal concept has also provided us one of the pillars on which a new holistic paradigm for biology can be built. So, it would seem of value to retrace some of the twists and turns in the history of the development of the archaeal concept. Given my position vis-à-vis the archaea, my account will be a personal one.

Entities:  

Year:  2004        PMID: 16328833     DOI: 10.1023/B:PRES.0000030445.04503.e6

Source DB:  PubMed          Journal:  Photosynth Res        ISSN: 0166-8595            Impact factor:   3.573


  33 in total

1.  Whole genome-based phylogenetic analysis of free-living microorganisms.

Authors:  S T Fitz-Gibbon; C H House
Journal:  Nucleic Acids Res       Date:  1999-11-01       Impact factor: 16.971

2.  Is it time to uproot the tree of life?

Authors:  E Pennisi
Journal:  Science       Date:  1999-05-21       Impact factor: 47.728

3.  A phylogenetic definition of the major eubacterial taxa.

Authors:  C R Woese; E Stackebrandt; T J Macke; G E Fox
Journal:  Syst Appl Microbiol       Date:  1985       Impact factor: 4.022

4.  The phylogenetic relationships of three sulfur dependent archaebacteria.

Authors:  C R Woese; R Gupta; C M Hahn; W Zillig; J Tu
Journal:  Syst Appl Microbiol       Date:  1984       Impact factor: 4.022

Review 5.  Translation: in retrospect and prospect.

Authors:  C R Woese
Journal:  RNA       Date:  2001-08       Impact factor: 4.942

Review 6.  Biochemistry of methanogenesis.

Authors:  R S Wolfe
Journal:  Biochem Soc Symp       Date:  1992

7.  Archaebacteria.

Authors:  C R Woese; L J Magrum; G E Fox
Journal:  J Mol Evol       Date:  1978-08-02       Impact factor: 2.395

8.  The phylogeny of prokaryotes.

Authors:  G E Fox; E Stackebrandt; R B Hespell; J Gibson; J Maniloff; T A Dyer; R S Wolfe; W E Balch; R S Tanner; L J Magrum; L B Zablen; R Blakemore; R Gupta; L Bonen; B J Lewis; D A Stahl; K R Luehrsen; K N Chen; C R Woese
Journal:  Science       Date:  1980-07-25       Impact factor: 47.728

9.  Evolutionary relationships among photosynthetic bacteria.

Authors:  Radhey S Gupta
Journal:  Photosynth Res       Date:  2003       Impact factor: 3.573

10.  Archaebacteria and eukaryotes possess DNA-dependent RNA polymerases of a common type.

Authors:  J Huet; R Schnabel; A Sentenac; W Zillig
Journal:  EMBO J       Date:  1983       Impact factor: 11.598

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  9 in total

1.  Research on Carbon Dioxide Fixation in Photosynthetic Microorganisms (1971-present).

Authors:  F Robert Tabita
Journal:  Photosynth Res       Date:  2004       Impact factor: 3.573

2.  The origin of a derived superkingdom: how a gram-positive bacterium crossed the desert to become an archaeon.

Authors:  Ruben E Valas; Philip E Bourne
Journal:  Biol Direct       Date:  2011-02-28       Impact factor: 4.540

3.  Remembering Otto Kandler (1920-2017) and his contributions.

Authors:  Widmar Tanner
Journal:  Photosynth Res       Date:  2018-06-15       Impact factor: 3.573

Review 4.  Horizontal gene transfers with or without cell fusions in all categories of the living matter.

Authors:  Joseph G Sinkovics
Journal:  Adv Exp Med Biol       Date:  2011       Impact factor: 2.622

Review 5.  S-layer glycoproteins and flagellins: reporters of archaeal posttranslational modifications.

Authors:  Ken F Jarrell; Gareth M Jones; Lina Kandiba; Divya B Nair; Jerry Eichler
Journal:  Archaea       Date:  2010-07-20       Impact factor: 3.273

6.  A pursuit of lineage-specific and niche-specific proteome features in the world of archaea.

Authors:  Anindya Roy Chowdhury; Chitra Dutta
Journal:  BMC Genomics       Date:  2012-06-12       Impact factor: 3.969

Review 7.  Evolution of microbes and viruses: a paradigm shift in evolutionary biology?

Authors:  Eugene V Koonin; Yuri I Wolf
Journal:  Front Cell Infect Microbiol       Date:  2012-09-13       Impact factor: 5.293

Review 8.  What Is the Tree of Life?

Authors:  W Ford Doolittle; Tyler D P Brunet
Journal:  PLoS Genet       Date:  2016-04-14       Impact factor: 5.917

9.  What is an archaeon and are the Archaea really unique?

Authors:  Ajith Harish
Journal:  PeerJ       Date:  2018-10-18       Impact factor: 2.984

  9 in total

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