Literature DB >> 16321505

Utilization of a zebra finch BAC library to determine the structure of an avian androgen receptor genomic region.

Meizhong Luo1, Yeisoo Yu, Hyeran Kim, Dave Kudrna, Yuichiro Itoh, Robert J Agate, Esther Melamed, José L Goicoechea, Jayson Talag, Christopher Mueller, Wenming Wang, Jennifer Currie, Nicholas B Sisneros, Rod A Wing, Arthur P Arnold.   

Abstract

The zebra finch (Taeniopygia guttata) is an important model organism for studying behavior, neuroscience, avian biology, and evolution. To support the study of its genome, we constructed a BAC library (TG__Ba) using DNA from livers of females. The BAC library consists of 147,456 clones with 98% containing inserts of an average size of 134 kb and represents 15.5 haploid genome equivalents. By sequencing a whole BAC, a full-length androgen receptor open reading frame was identified, the first in an avian species. Comparison of BAC end sequences and the whole BAC sequence with the chicken genome draft sequence showed a high degree of conserved synteny between the zebra finch and the chicken genome.

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Year:  2006        PMID: 16321505     DOI: 10.1016/j.ygeno.2005.09.005

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  12 in total

1.  Transgenic songbirds offer an opportunity to develop a genetic model for vocal learning.

Authors:  R J Agate; B B Scott; B Haripal; C Lois; F Nottebohm
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-07       Impact factor: 11.205

2.  Comparison of the chicken and zebra finch Z chromosomes shows evolutionary rearrangements.

Authors:  Yuichiro Itoh; Kathy Kampf; Arthur P Arnold
Journal:  Chromosome Res       Date:  2007-01-19       Impact factor: 5.239

3.  The chromosomal polymorphism linked to variation in social behavior in the white-throated sparrow (Zonotrichia albicollis) is a complex rearrangement and suppressor of recombination.

Authors:  James W Thomas; Mario Cáceres; Joshua J Lowman; Caroline B Morehouse; Meghan E Short; Erin L Baldwin; Donna L Maney; Christa L Martin
Journal:  Genetics       Date:  2008-06-18       Impact factor: 4.562

4.  Genomic and neural analysis of the estradiol-synthetic pathway in the zebra finch.

Authors:  Sarah E London; David F Clayton
Journal:  BMC Neurosci       Date:  2010-04-01       Impact factor: 3.288

5.  Disruption of FEM1C-W gene in zebra finch: evolutionary insights on avian ZW genes.

Authors:  Yuichiro Itoh; Kathy Kampf; Arthur P Arnold
Journal:  Chromosoma       Date:  2009-01-13       Impact factor: 4.316

6.  Enhancing genome investigations in the mosquito Culex quinquefasciatus via BAC library construction and characterization.

Authors:  Paul V Hickner; Becky Debruyn; Diane D Lovin; Akio Mori; Christopher A Saski; David W Severson
Journal:  BMC Res Notes       Date:  2011-09-13

7.  Karyotypic polymorphism of the zebra finch Z chromosome.

Authors:  Yuichiro Itoh; Kathy Kampf; Christopher N Balakrishnan; Arthur P Arnold
Journal:  Chromosoma       Date:  2011-01-11       Impact factor: 4.316

8.  A pair of new BAC and BIBAC vectors that facilitate BAC/BIBAC library construction and intact large genomic DNA insert exchange.

Authors:  Xue Shi; Haiyang Zeng; Yadong Xue; Meizhong Luo
Journal:  Plant Methods       Date:  2011-10-11       Impact factor: 4.993

9.  Molecular cloning and characterization of the germline-restricted chromosome sequence in the zebra finch.

Authors:  Yuichiro Itoh; Kathy Kampf; María Inés Pigozzi; Arthur P Arnold
Journal:  Chromosoma       Date:  2009-05-19       Impact factor: 4.316

10.  Molecular cloning of zebra finch W chromosome repetitive sequences: evolution of the avian W chromosome.

Authors:  Yuichiro Itoh; Kathy Kampf; Arthur P Arnold
Journal:  Chromosoma       Date:  2007-10-31       Impact factor: 2.919

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