Literature DB >> 16314454

The polypyrimidine tract binding protein is a monomer.

Tom P Monie1, Helena Hernandez, Carol V Robinson, Peter Simpson, Stephen Matthews, Stephen Curry.   

Abstract

The polypyrimidine tract binding (PTB) protein is a potent regulator of alternative mRNA splicing. It also participates in other essential cellular functions, including translation initiation and polyadenylation. Several published reports have suggested that the protein forms a dimer in solution, a feature that has been widely incorporated into mechanistic models of protein function. However, recent studies have provided indications that full-length PTB is a monomer. Here we present new biophysical and biochemical evidence supporting the monomeric status of the protein. By use of blue-native polyacrylamide gel electrophoresis and size-exclusion chromatography, PTB was observed as a single molecular species under native reducing environments, though in oxidizing conditions, a larger protein species was also detected. Further analyses of wild-type and mutant PTB molecules with SDS-PAGE and time-of-flight electrospray ionization mass spectroscopy confirmed these observations. They also identified the single reduced species as monomeric PTB and the higher-molecular-weight nonreduced species as disulphide-linked PTB dimer mediated by Cys23. Our results indicate that the use of oxidizing environments in previous studies is likely to have contributed to the mis-assignment of PTB as a dimer. Although purified PTB may form disulphide-linked dimers under these conditions, in the reducing intracellular environment the protein will be monomeric. These findings have implications for the construction of models of PTB function in regulating mRNA metabolism.

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Year:  2005        PMID: 16314454      PMCID: PMC1370869          DOI: 10.1261/rna.2214405

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  30 in total

1.  Multisite RNA binding and release of polypyrimidine tract binding protein during the regulation of c-src neural-specific splicing.

Authors:  M Y Chou; J G Underwood; J Nikolic; M H Luu; D L Black
Journal:  Mol Cell       Date:  2000-06       Impact factor: 17.970

2.  Cell-specific proteins regulate viral RNA translation and virus-induced disease.

Authors:  E V Pilipenko; E G Viktorova; S T Guest; V I Agol; R P Roos
Journal:  EMBO J       Date:  2001-12-03       Impact factor: 11.598

Review 3.  Dynamic protein complexes: insights from mass spectrometry.

Authors:  H Hernández; C V Robinson
Journal:  J Biol Chem       Date:  2001-10-03       Impact factor: 5.157

4.  A brain-enriched polypyrimidine tract-binding protein antagonizes the ability of Nova to regulate neuron-specific alternative splicing.

Authors:  A D Polydorides; H J Okano; Y Y Yang; G Stefani; R B Darnell
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-06       Impact factor: 11.205

5.  Protein factor requirements of the Apaf-1 internal ribosome entry segment: roles of polypyrimidine tract binding protein and upstream of N-ras.

Authors:  S A Mitchell; E C Brown; M J Coldwell; R J Jackson; A E Willis
Journal:  Mol Cell Biol       Date:  2001-05       Impact factor: 4.272

6.  The Apaf-1 internal ribosome entry segment attains the correct structural conformation for function via interactions with PTB and unr.

Authors:  Sally A Mitchell; Keith A Spriggs; Mark J Coldwell; Richard J Jackson; Anne E Willis
Journal:  Mol Cell       Date:  2003-03       Impact factor: 17.970

7.  Polypyrimidine tract binding protein blocks the 5' splice site-dependent assembly of U2AF and the prespliceosomal E complex.

Authors:  Shalini Sharma; Arnold M Falick; Douglas L Black
Journal:  Mol Cell       Date:  2005-08-19       Impact factor: 17.970

8.  Polypyrimidine tract binding protein and poly r(C) binding protein 1 interact with the BAG-1 IRES and stimulate its activity in vitro and in vivo.

Authors:  Becky M Pickering; Sally A Mitchell; Joanne R Evans; Anne E Willis
Journal:  Nucleic Acids Res       Date:  2003-01-15       Impact factor: 16.971

9.  Structure of tandem RNA recognition motifs from polypyrimidine tract binding protein reveals novel features of the RRM fold.

Authors:  M R Conte; T Grüne; J Ghuman; G Kelly; A Ladas; S Matthews; S Curry
Journal:  EMBO J       Date:  2000-06-15       Impact factor: 11.598

10.  Raver1, a dual compartment protein, is a ligand for PTB/hnRNPI and microfilament attachment proteins.

Authors:  S Hüttelmaier; S Illenberger; I Grosheva; M Rüdiger; R H Singer; B M Jockusch
Journal:  J Cell Biol       Date:  2001-11-26       Impact factor: 10.539

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  13 in total

1.  Polypyrimidine tract-binding protein stimulates the poliovirus IRES by modulating eIF4G binding.

Authors:  Panagiota Kafasla; Nina Morgner; Carol V Robinson; Richard J Jackson
Journal:  EMBO J       Date:  2010-09-21       Impact factor: 11.598

Review 2.  Diverse regulation of 3' splice site usage.

Authors:  Muhammad Sohail; Jiuyong Xie
Journal:  Cell Mol Life Sci       Date:  2015-09-14       Impact factor: 9.261

3.  A polypyrimidine tract binding protein, pumpkin RBP50, forms the basis of a phloem-mobile ribonucleoprotein complex.

Authors:  Byung-Kook Ham; Jeri L Brandom; Beatriz Xoconostle-Cázares; Vanessa Ringgold; Tony J Lough; William J Lucas
Journal:  Plant Cell       Date:  2009-01-02       Impact factor: 11.277

4.  Drosophila polypyrimidine tract-binding protein is necessary for spermatid individualization.

Authors:  Mark Robida; Vinod Sridharan; Sheridan Morgan; Timsi Rao; Ravinder Singh
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-28       Impact factor: 11.205

5.  Neuronal regulation of pre-mRNA splicing by polypyrimidine tract binding proteins, PTBP1 and PTBP2.

Authors:  Niroshika Keppetipola; Shalini Sharma; Qin Li; Douglas L Black
Journal:  Crit Rev Biochem Mol Biol       Date:  2012-06-02       Impact factor: 8.250

6.  Repression of alpha-actinin SM exon splicing by assisted binding of PTB to the polypyrimidine tract.

Authors:  Arianne J Matlin; Justine Southby; Clare Gooding; Christopher W J Smith
Journal:  RNA       Date:  2007-06-25       Impact factor: 4.942

7.  The domains of polypyrimidine tract binding protein have distinct RNA structural preferences.

Authors:  Caroline Clerte; Kathleen B Hall
Journal:  Biochemistry       Date:  2009-03-17       Impact factor: 3.162

8.  Genome-wide analysis of PTB-RNA interactions reveals a strategy used by the general splicing repressor to modulate exon inclusion or skipping.

Authors:  Yuanchao Xue; Yu Zhou; Tongbin Wu; Tuo Zhu; Xiong Ji; Young-Soo Kwon; Chao Zhang; Gene Yeo; Douglas L Black; Hui Sun; Xiang-Dong Fu; Yi Zhang
Journal:  Mol Cell       Date:  2009-12-25       Impact factor: 17.970

9.  A polypyrimidine tract-binding protein-dependent pathway of mRNA stability initiates with CpG activation of primary B cells.

Authors:  Joseph F Porter; Stefano Vavassori; Lori R Covey
Journal:  J Immunol       Date:  2008-09-01       Impact factor: 5.422

10.  Activation of picornaviral IRESs by PTB shows differential dependence on each PTB RNA-binding domain.

Authors:  Panagiota Kafasla; Helen Lin; Stephen Curry; Richard J Jackson
Journal:  RNA       Date:  2011-04-25       Impact factor: 4.942

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