Literature DB >> 16310723

Plant metabolomics: potential for practical operation.

Eiichiro Fukusaki1, Akio Kobayashi.   

Abstract

In the postgenomic era, metabolomics is expected to be the newest useful omics science for functional genomics. However, in plant science, the present metabolomics technology cannot be considered a universal tool to perfectly elucidate perturbations imposed on sample plants although this is desired by plant physiologists. Despite it being an immature technology, metabolomics has already been used as a powerful tool for precise phenotyping, particularly for industrial application. Metabolomics is the best technology for the analysis of large mutant or transgenic libraries of model experimental plants, such as Arabidopsis, rice, etc. Here, we review the applications and technical problems of metabolomics. We also suggest the potential of metabolomics for plant post-genomic science.

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Year:  2005        PMID: 16310723     DOI: 10.1263/jbb.100.347

Source DB:  PubMed          Journal:  J Biosci Bioeng        ISSN: 1347-4421            Impact factor:   2.894


  22 in total

Review 1.  Diagnosis of gastroenterological diseases by metabolome analysis using gas chromatography-mass spectrometry.

Authors:  Masaru Yoshida; Naoya Hatano; Shin Nishiumi; Yasuhiro Irino; Yoshihiro Izumi; Tadaomi Takenawa; Takeshi Azuma
Journal:  J Gastroenterol       Date:  2011-11-02       Impact factor: 7.527

2.  Negative ion ultraviolet matrix-assisted laser desorption ionization mass spectrometry and post source decay of glycosyl esters of nucleoside pyrophosphates.

Authors:  Maria Heinrich; Christina Schäffer; Paul Messner; Günter Allmaier
Journal:  Eur J Mass Spectrom (Chichester)       Date:  2008       Impact factor: 1.067

3.  Activation of camalexin biosynthesis in Arabidopsis thaliana in response to perception of bacterial lipopolysaccharides: a gene-to-metabolite study.

Authors:  Caryn Ann Beets; Ju-Chi Huang; Ntakadzeni Edwin Madala; Ian Dubery
Journal:  Planta       Date:  2012-02-18       Impact factor: 4.116

4.  Gene transcript and metabolite profiling of elicitor-induced opium poppy cell cultures reveals the coordinate regulation of primary and secondary metabolism.

Authors:  Katherine G Zulak; Anthony Cornish; Timothy E Daskalchuk; Michael K Deyholos; Dayan B Goodenowe; Paul M K Gordon; Darren Klassen; Lawrence E Pelcher; Christoph W Sensen; Peter J Facchini
Journal:  Planta       Date:  2006-11-01       Impact factor: 4.116

5.  Proposal for field sampling of plants and processing in the lab for environmental metabolic fingerprinting.

Authors:  Tanja S Maier; Jürgen Kuhn; Caroline Müller
Journal:  Plant Methods       Date:  2010-01-29       Impact factor: 4.993

6.  Recent advances of metabolomics in plant biotechnology.

Authors:  Yozo Okazaki; Kazuki Saito
Journal:  Plant Biotechnol Rep       Date:  2011-07-29       Impact factor: 2.010

7.  A metabolomics-based strategy for identification of gene targets for phenotype improvement and its application to 1-butanol tolerance in Saccharomyces cerevisiae.

Authors:  Shao Thing Teoh; Sastia Putri; Yukio Mukai; Takeshi Bamba; Eiichiro Fukusaki
Journal:  Biotechnol Biofuels       Date:  2015-09-15       Impact factor: 6.040

8.  Exometabolomics approaches in studying the application of lignocellulosic biomass as fermentation feedstock.

Authors:  Ying Zha; Peter J Punt
Journal:  Metabolites       Date:  2013-02-11

9.  Multi-platform metabolomic analyses of ergosterol-induced dynamic changes in Nicotiana tabacum cells.

Authors:  Fidele Tugizimana; Paul A Steenkamp; Lizelle A Piater; Ian A Dubery
Journal:  PLoS One       Date:  2014-01-31       Impact factor: 3.240

10.  Metabolic profiling of retrograde pathway transcription factors rtg1 and rtg3 knockout yeast.

Authors:  Zanariah Hashim; Yukio Mukai; Takeshi Bamba; Eiichiro Fukusaki
Journal:  Metabolites       Date:  2014-07-08
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