Literature DB >> 16307820

Divergent IRES elements in invertebrates.

Eric Jan1.   

Abstract

Viruses have evolved unique strategies and mechanisms to recruit ribosomes to ensure continued translation of their viral RNA during infection. The Dicistroviridae family of invertebrate viruses contains an unusual internal ribosome entry site (IRES), which can directly recruit ribosomes in the absence of initiation factors. Moreover, this IRES initiates translation at a non-AUG codon independent of an initiator Met-tRNA. Recent studies have shown that the IRES mimicks a tRNA to interact with and manipulate the ribosome. The presence of this divergent IRES likely allows translation of the dicistroviral RNA during infection when host translation is compromised. This review will explore the unique properties of this unprecedented mechanism of gene expression. Specific topics will examine structural components of the IRES, the mechanism of initiating translation at non-AUG codons and the regulation of this IRES in vivo. The existence of this mechanism suggests that the repertoire of open reading frames in our genome may be greater than anticipated.

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Year:  2005        PMID: 16307820     DOI: 10.1016/j.virusres.2005.10.011

Source DB:  PubMed          Journal:  Virus Res        ISSN: 0168-1702            Impact factor:   3.303


  53 in total

1.  Alternative reading frame selection mediated by a tRNA-like domain of an internal ribosome entry site.

Authors:  Qian Ren; Qing S Wang; Andrew E Firth; Mandy M Y Chan; Joost W Gouw; M Marta Guarna; Leonard J Foster; John F Atkins; Eric Jan
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-13       Impact factor: 11.205

2.  Modular domains of the Dicistroviridae intergenic internal ribosome entry site.

Authors:  Christopher J Jang; Eric Jan
Journal:  RNA       Date:  2010-04-27       Impact factor: 4.942

3.  Structural basis for ribosome recruitment and manipulation by a viral IRES RNA.

Authors:  Jennifer S Pfingsten; David A Costantino; Jeffrey S Kieft
Journal:  Science       Date:  2006-11-23       Impact factor: 47.728

Review 4.  The amazing diversity of cap-independent translation elements in the 3'-untranslated regions of plant viral RNAs.

Authors:  W A Miller; Z Wang; K Treder
Journal:  Biochem Soc Trans       Date:  2007-12       Impact factor: 5.407

5.  The 3' cap-independent translation element of Barley yellow dwarf virus binds eIF4F via the eIF4G subunit to initiate translation.

Authors:  Krzysztof Treder; Elizabeth L Pettit Kneller; Edwards M Allen; Zhaohui Wang; Karen S Browning; W Allen Miller
Journal:  RNA       Date:  2007-11-19       Impact factor: 4.942

6.  Conservation and diversity among the three-dimensional folds of the Dicistroviridae intergenic region IRESes.

Authors:  Jennifer S Pfingsten; David A Costantino; Jeffrey S Kieft
Journal:  J Mol Biol       Date:  2007-05-08       Impact factor: 5.469

7.  tRNA-mRNA mimicry drives translation initiation from a viral IRES.

Authors:  David A Costantino; Jennifer S Pfingsten; Robert P Rambo; Jeffrey S Kieft
Journal:  Nat Struct Mol Biol       Date:  2007-12-23       Impact factor: 15.369

Review 8.  Viral IRES RNA structures and ribosome interactions.

Authors:  Jeffrey S Kieft
Journal:  Trends Biochem Sci       Date:  2008-05-28       Impact factor: 13.807

9.  The Nerium oleander aphid Aphis nerii is tolerant to a local isolate of Aphid lethal paralysis virus (ALPV).

Authors:  Aviv Dombrovsky; Neta Luria
Journal:  Virus Genes       Date:  2012-11-16       Impact factor: 2.332

10.  Methylation of a single intronic CpG mediates expression silencing of the PMP24 gene in prostate cancer.

Authors:  Xiang Zhang; Mengchu Wu; Hong Xiao; Ming-Tsung Lee; Linda Levin; Yuet-Kin Leung; Shuk-Mei Ho
Journal:  Prostate       Date:  2010-05-15       Impact factor: 4.104

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