Literature DB >> 16292812

Progressive systematic underestimation of reaction energies by the B3LYP model as the number of C-C bonds increases: why organic chemists should use multiple DFT models for calculations involving polycarbon hydrocarbons.

Catherine E Check1, Thomas M Gilbert.   

Abstract

[reaction: see text] Computational studies of three different reaction types involving hydrocarbons (homolytic C-C bond breaking of alkanes, progressive insertions of triplet methylene into C-H bonds of ethane, and [2+2] cyclizations of methyl-substituted alkenes to form polymethylcyclobutanes) show that the B3LYP model consistently underestimates the reaction energy, even when extremely large basis sets are employed. The error is systematic and cumulative, such that the reaction energies of reactions involving hydrocarbons with more than 4-6 C-C bonds are predicted quite poorly. Energies are underestimated for slightly and highly methyl-substituted cyclic and acyclic hydrocarbons, so the errors do not arise from structural issues such as steric repulsion or ring strain energy. We trace the error associated with the B3LYP approach to its consistent underestimation of the C-C bond energy. Other DFT models show this problem to lesser extents, while the MP2 method avoids it. As a consequence, we discourage the use of the B3LYP model for reaction energy calculations for organic compounds containing more than four carbon atoms. We advocate use of a collection of pure and hybrid DFT models (and ab initio models where possible) to provide computational "error bars".

Entities:  

Year:  2005        PMID: 16292812     DOI: 10.1021/jo051545k

Source DB:  PubMed          Journal:  J Org Chem        ISSN: 0022-3263            Impact factor:   4.354


  11 in total

1.  Dynamic effects on the periselectivity, rate, isotope effects, and mechanism of cycloadditions of ketenes with cyclopentadiene.

Authors:  Bryson R Ussing; Chao Hang; Daniel A Singleton
Journal:  J Am Chem Soc       Date:  2006-06-14       Impact factor: 15.419

2.  An assessment of DFT methods for predicting the thermochemistry of ion-molecule reactions of group 14 elements (Si, Ge, Sn).

Authors:  Igor S Ignatyev; Manuel Montejo; Juan Jesús López González
Journal:  J Mol Model       Date:  2013-11-08       Impact factor: 1.810

3.  Synthetic scope, computational chemistry and mechanism of a base induced 5-endo cyclization of benzyl alkynyl sulfides.

Authors:  John M Motto; Alvaro Castillo; Alexander Greer; Laura K Montemayer; Erin E Sheepwash; Adrian L Schwan
Journal:  Tetrahedron       Date:  2011-02-04       Impact factor: 2.457

4.  Accurate reaction enthalpies and sources of error in DFT thermochemistry for aldol, Mannich, and alpha-aminoxylation reactions.

Authors:  Steven E Wheeler; Antonio Moran; Susan N Pieniazek; K N Houk
Journal:  J Phys Chem A       Date:  2009-09-24       Impact factor: 2.781

5.  A computational investigation of sulfur-containing heterocyclic components from the anal sac secretions of Mustela species.

Authors:  William N Setzer
Journal:  J Mol Model       Date:  2008-07-15       Impact factor: 1.810

6.  Understanding the domino retro [3+2] cycloaddition/cyclization reaction of bicyclic isoxazolidines in the synthesis of spirocyclic alkaloids. A DFT study.

Authors:  Hatem Layeb; Abdelmalek Khorief Nacereddine; Abdelhafid Djerourou; Luis R Domingo
Journal:  J Mol Model       Date:  2014-07-09       Impact factor: 1.810

7.  Studies on the Himbert intramolecular arene/allene Diels-Alder cycloaddition. Mechanistic studies and expansion of scope to all-carbon tethers.

Authors:  Yvonne Schmidt; Jonathan K Lam; Hung V Pham; K N Houk; Christopher D Vanderwal
Journal:  J Am Chem Soc       Date:  2013-05-01       Impact factor: 15.419

8.  Towards a converged strategy for including microsolvation in reaction mechanism calculations.

Authors:  Rebecca Sure; Moad El Mahdali; Alex Plajer; Peter Deglmann
Journal:  J Comput Aided Mol Des       Date:  2021-01-09       Impact factor: 3.686

9.  A case study of the mechanism of alcohol-mediated Morita Baylis-Hillman reactions. The importance of experimental observations.

Authors:  R Erik Plata; Daniel A Singleton
Journal:  J Am Chem Soc       Date:  2015-03-13       Impact factor: 15.419

Review 10.  Benchmarking Quantum Chemical Methods: Are We Heading in the Right Direction?

Authors:  Ricardo A Mata; Martin A Suhm
Journal:  Angew Chem Int Ed Engl       Date:  2017-04-28       Impact factor: 15.336

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.