Literature DB >> 16288915

Crystal structure of wild-type chaperonin GroEL.

Cecilia Bartolucci1, Doriano Lamba, Saulius Grazulis, Elena Manakova, Hermann Heumann.   

Abstract

The 2.9A resolution crystal structure of apo wild-type GroEL was determined for the first time and represents the reference structure, facilitating the study of structural and functional differences observed in GroEL variants. Until now the crystal structure of the mutant Arg13Gly, Ala126Val GroEL was used for this purpose. We show that, due to the mutations as well as to the presence of a crystallographic symmetry, the ring-ring interface was inaccurately described. Analysis of the present structure allowed the definition of structural elements at this interface, essential for understanding the inter-ring allosteric signal transmission. We also show unambiguously that there is no ATP-induced 102 degrees rotation of the apical domain helix I around its helical axis, as previously assumed in the crystal structure of the (GroEL-KMgATP)(14) complex, and analyze the apical domain movements. These results enabled us to compare our structure with other GroEL crystal structures already published, allowing us to suggest a new route through which the allosteric signal for negative cooperativity propagates within the molecule. The proposed mechanism, supported by known mutagenesis data, underlines the importance of the switching of salt bridges.

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Year:  2005        PMID: 16288915     DOI: 10.1016/j.jmb.2005.09.096

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  29 in total

1.  Crystallization and preliminary X-ray crystallographic analysis of a GroEL1 fragment from Mycobacterium tuberculosis H37Rv.

Authors:  Bernhard Sielaff; Ki Seog Lee; Francis T F Tsai
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-03-31

2.  Glu257 in GroEL is a sensor involved in coupling polypeptide substrate binding to stimulation of ATP hydrolysis.

Authors:  Oded Danziger; Liat Shimon; Amnon Horovitz
Journal:  Protein Sci       Date:  2006-05-02       Impact factor: 6.725

3.  Structural and functional conservation of Mycobacterium tuberculosis GroEL paralogs suggests that GroEL1 Is a chaperonin.

Authors:  Bernhard Sielaff; Ki Seog Lee; Francis T F Tsai
Journal:  J Mol Biol       Date:  2010-11-19       Impact factor: 5.469

4.  Purification, crystallization and structure determination of native GroEL from Escherichia coli lacking bound potassium ions.

Authors:  Philip D Kiser; David T Lodowski; Krzysztof Palczewski
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-05-05

5.  Crystal structure of a GroEL-ADP complex in the relaxed allosteric state at 2.7 Å resolution.

Authors:  Xue Fei; Dong Yang; Nicole LaRonde-LeBlanc; George H Lorimer
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-16       Impact factor: 11.205

6.  Use of thallium to identify monovalent cation binding sites in GroEL.

Authors:  Philip D Kiser; George H Lorimer; Krzysztof Palczewski
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-09-18

7.  Large-scale conformational sampling of proteins using temperature-accelerated molecular dynamics.

Authors:  Cameron F Abrams; Eric Vanden-Eijnden
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-01       Impact factor: 11.205

Review 8.  Phospholipase D: enzymology, functionality, and chemical modulation.

Authors:  Paige E Selvy; Robert R Lavieri; Craig W Lindsley; H Alex Brown
Journal:  Chem Rev       Date:  2011-09-22       Impact factor: 60.622

9.  Disassembly/reassembly strategy for the production of highly pure GroEL, a tetradecameric supramolecular machine, suitable for quantitative NMR, EPR and mutational studies.

Authors:  Marielle A Wälti; G Marius Clore
Journal:  Protein Expr Purif       Date:  2017-09-22       Impact factor: 1.650

10.  Subunit conformational variation within individual GroEL oligomers resolved by Cryo-EM.

Authors:  Soung-Hun Roh; Corey F Hryc; Hyun-Hwan Jeong; Xue Fei; Joanita Jakana; George H Lorimer; Wah Chiu
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-14       Impact factor: 11.205

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