Literature DB >> 17554162

Purification, crystallization and structure determination of native GroEL from Escherichia coli lacking bound potassium ions.

Philip D Kiser1, David T Lodowski, Krzysztof Palczewski.   

Abstract

GroEL is a member of the ATP-dependent chaperonin family that promotes the proper folding of many cytosolic bacterial proteins. The structures of GroEL in a variety of different states have been determined using X-ray crystallography and cryo-electron microscopy. In this study, a 3.02 A crystal structure of the native GroEL complex from Escherichia coli is presented. The complex was purified and crystallized in the absence of potassium ions, which allowed evaluation of the structural changes that may occur in response to cognate potassium-ion binding by comparison to the previously determined wild-type GroEL structure (PDB code 1xck), in which potassium ions were observed in all 14 subunits. In general, the structure is similar to the previously determined wild-type GroEL crystal structure with some differences in regard to temperature-factor distribution.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 17554162      PMCID: PMC2335072          DOI: 10.1107/S1744309107020295

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  29 in total

Review 1.  Objective comparison of protein structures: error-scaled difference distance matrices.

Authors:  T R Schneider
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-06

2.  Identification of in vivo substrates of the chaperonin GroEL.

Authors:  W A Houry; D Frishman; C Eckerskorn; F Lottspeich; F U Hartl
Journal:  Nature       Date:  1999-11-11       Impact factor: 49.962

3.  The crystal structure of a GroEL/peptide complex: plasticity as a basis for substrate diversity.

Authors:  L Chen; P B Sigler
Journal:  Cell       Date:  1999-12-23       Impact factor: 41.582

Review 4.  Remarks about protein structure precision.

Authors:  D W Cruickshank
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-03

5.  ATP-bound states of GroEL captured by cryo-electron microscopy.

Authors:  N A Ranson; G W Farr; A M Roseman; B Gowen; W A Fenton; A L Horwich; H R Saibil
Journal:  Cell       Date:  2001-12-28       Impact factor: 41.582

6.  A genetic algorithm for the identification of conformationally invariant regions in protein molecules.

Authors:  Thomas R Schneider
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-01-24

7.  GroEL/GroES-mediated folding of a protein too large to be encapsulated.

Authors:  T K Chaudhuri; G W Farr; W A Fenton; S Rospert; A L Horwich
Journal:  Cell       Date:  2001-10-19       Impact factor: 41.582

8.  Tobacco etch virus protease: mechanism of autolysis and rational design of stable mutants with wild-type catalytic proficiency.

Authors:  R B Kapust; J Tözsér; J D Fox; D E Anderson; S Cherry; T D Copeland; D S Waugh
Journal:  Protein Eng       Date:  2001-12

9.  Papillomavirus capsid protein expression in Escherichia coli: purification and assembly of HPV11 and HPV16 L1.

Authors:  X S Chen; G Casini; S C Harrison; R L Garcea
Journal:  J Mol Biol       Date:  2001-03-16       Impact factor: 5.469

10.  Mechanisms for GroEL/GroES-mediated folding of a large 86-kDa fusion polypeptide in vitro.

Authors:  Y S Huang; D T Chuang
Journal:  J Biol Chem       Date:  1999-04-09       Impact factor: 5.157

View more
  6 in total

1.  Use of thallium to identify monovalent cation binding sites in GroEL.

Authors:  Philip D Kiser; George H Lorimer; Krzysztof Palczewski
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-09-18

2.  Structure of glycerol dehydrogenase from Serratia.

Authors:  Paul Musille; Eric Ortlund
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-01-21       Impact factor: 1.056

3.  ContaMiner and ContaBase: a webserver and database for early identification of unwantedly crystallized protein contaminants.

Authors:  Arnaud Hungler; Afaque Momin; Kay Diederichs; Stefan T Arold
Journal:  J Appl Crystallogr       Date:  2016-11-02       Impact factor: 3.304

4.  UCSF Chimera, MODELLER, and IMP: an integrated modeling system.

Authors:  Zheng Yang; Keren Lasker; Dina Schneidman-Duhovny; Ben Webb; Conrad C Huang; Eric F Pettersen; Thomas D Goddard; Elaine C Meng; Andrej Sali; Thomas E Ferrin
Journal:  J Struct Biol       Date:  2011-09-22       Impact factor: 2.867

5.  Adsorption characteristics of an enteric virus-binding protein to norovirus, rotavirus and poliovirus.

Authors:  Takahiro Imai; Daisuke Sano; Takayuki Miura; Satoshi Okabe; Keishi Wada; Yoshifumi Masago; Tatsuo Omura
Journal:  BMC Biotechnol       Date:  2011-12-16       Impact factor: 2.563

Review 6.  Comparative analysis of the Photorhabdus luminescens and the Yersinia enterocolitica genomes: uncovering candidate genes involved in insect pathogenicity.

Authors:  Ralf Heermann; Thilo M Fuchs
Journal:  BMC Genomics       Date:  2008-01-25       Impact factor: 3.969

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.