Literature DB >> 16287970

Target site localization by site-specific, DNA-binding proteins.

Jonathan Widom1.   

Abstract

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Year:  2005        PMID： 16287970      PMCID： PMC1288015          DOI： 10.1073/pnas.0508686102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  22 in total

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2.  DNA looping and physical constraints on transcription regulation.

Authors:  José M G Vilar; Stanislas Leibler
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3.  Physical constraints and functional characteristics of transcription factor-DNA interaction.

Authors:  Ulrich Gerland; J David Moroz; Terence Hwa
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-06       Impact factor: 11.205

Review 4.  Facilitated target location in biological systems.

Authors:  P H von Hippel; O G Berg
Journal:  J Biol Chem       Date:  1989-01-15       Impact factor: 5.157

Review 5.  Gene regulatory networks for development.

Authors:  Michael Levine; Eric H Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-23       Impact factor: 11.205

6.  Transition from nonspecific to specific DNA interactions along the substrate-recognition pathway of dam methyltransferase.

Authors:  John R Horton; Kirsten Liebert; Stanley Hattman; Albert Jeltsch; Xiaodong Cheng
Journal:  Cell       Date:  2005-05-06       Impact factor: 41.582

Review 7.  Analysis of effects of salts and uncharged solutes on protein and nucleic acid equilibria and processes: a practical guide to recognizing and interpreting polyelectrolyte effects, Hofmeister effects, and osmotic effects of salts.

Authors:  M T Record; W Zhang; C F Anderson
Journal:  Adv Protein Chem       Date:  1998

Review 8.  Simulation of prokaryotic genetic circuits.

Authors:  H H McAdams; A Arkin
Journal:  Annu Rev Biophys Biomol Struct       Date:  1998

9.  DNA bending by Cro protein in specific and nonspecific complexes: implications for protein site recognition and specificity.

Authors:  D A Erie; G Yang; H C Schultz; C Bustamante
Journal:  Science       Date:  1994-12-02       Impact factor: 47.728

10.  Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor--operator interaction: kinetic measurements and conclusions.

Authors:  R B Winter; O G Berg; P H von Hippel
Journal:  Biochemistry       Date:  1981-11-24       Impact factor: 3.162
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  10 in total

Review 1.  Reaction-diffusion systems in intracellular molecular transport and control.

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Journal:  Angew Chem Int Ed Engl       Date:  2010-06-07       Impact factor: 15.336

2.  How gene order is influenced by the biophysics of transcription regulation.

Authors:  Grigory Kolesov; Zeba Wunderlich; Olga N Laikova; Mikhail S Gelfand; Leonid A Mirny
Journal:  Proc Natl Acad Sci U S A       Date:  2007-08-20       Impact factor: 11.205

3.  Tumor suppressor p53 slides on DNA with low friction and high stability.

Authors:  Anahita Tafvizi; Fang Huang; Jason S Leith; Alan R Fersht; Leonid A Mirny; Antoine M van Oijen
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4.  Twist-open mechanism of DNA damage recognition by the Rad4/XPC nucleotide excision repair complex.

Authors:  Yogambigai Velmurugu; Xuejing Chen; Phillip Slogoff Sevilla; Jung-Hyun Min; Anjum Ansari
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-31       Impact factor: 11.205

Review 5.  Structure and function of photolyase and in vivo enzymology: 50th anniversary.

Authors:  Aziz Sancar
Journal:  J Biol Chem       Date:  2008-08-04       Impact factor: 5.157

6.  DNA target sequence identification mechanism for dimer-active protein complexes.

Authors:  Markita P Landry; Xueqing Zou; Lei Wang; Wai Mun Huang; Klaus Schulten; Yann R Chemla
Journal:  Nucleic Acids Res       Date:  2012-12-28       Impact factor: 16.971

7.  Investigating the Influence of Magnesium Ions on p53-DNA Binding Using Atomic Force Microscopy.

Authors:  Yang Chen; Tianyong Gao; Yanwei Wang; Guangcan Yang
Journal:  Int J Mol Sci       Date:  2017-07-21       Impact factor: 5.923

8.  General transfer matrix formalism to calculate DNA-protein-drug binding in gene regulation: application to OR operator of phage lambda.

Authors:  Vladimir B Teif
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9.  Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA.

Authors:  Isabelle Bonnet; Andreas Biebricher; Pierre-Louis Porté; Claude Loverdo; Olivier Bénichou; Raphaël Voituriez; Christophe Escudé; Wolfgang Wende; Alfred Pingoud; Pierre Desbiolles
Journal:  Nucleic Acids Res       Date:  2008-06-10       Impact factor: 16.971

10.  Human Lin28 Forms a High-Affinity 1:1 Complex with the 106~363 Cluster miRNA miR-363.

Authors:  Daniel T Peters; Herman K H Fung; Vladimir M Levdikov; Tobias Irmscher; Fiona C Warrander; Sandra J Greive; Oleg Kovalevskiy; Harry V Isaacs; Mark Coles; Alfred A Antson
Journal:  Biochemistry       Date:  2016-09-01       Impact factor: 3.162
  10 in total

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