Literature DB >> 1628747

A TIM barrel protein without enzymatic activity? Crystal-structure of narbonin at 1.8 A resolution.

M Hennig1, B Schlesier, Z Dauter, S Pfeffer, C Betzel, W E Höhne, K S Wilson.   

Abstract

The major protein component in seeds is storage protein. These have no known enzymatic activity and act to provide amino acids as a source of metabolites in the developing seedling. We report here the first three dimensional crystal structure of a seed storage globulin at high resolution. The molecule of the 2S globulin, narbonin, from Vicia narbonensis L., consists of an eight-stranded parallel alpha/beta barrel structure similar to that observed in triose phosphate isomerase (TIM). Narbonin is the first protein with this topology possessing no known enzymatic activity. Because of the lack of sequence information most of the primary structure was determined directly from the electron density.

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Year:  1992        PMID: 1628747     DOI: 10.1016/0014-5793(92)80842-5

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  12 in total

1.  Barrel structures in proteins: automatic identification and classification including a sequence analysis of TIM barrels.

Authors:  N Nagano; E G Hutchinson; J M Thornton
Journal:  Protein Sci       Date:  1999-10       Impact factor: 6.725

2.  Deep trefoil knot implicated in RNA binding found in an archaebacterial protein.

Authors:  Thomas I Zarembinski; Youngchang Kim; Kelly Peterson; Dinesh Christendat; Akil Dharamsi; Cheryl H Arrowsmith; Aled M Edwards; Andrzej Joachimiak
Journal:  Proteins       Date:  2003-02-01

3.  ArabidopsisChitinases: a Genomic Survey.

Authors:  Paul A Passarinho; Sacco C de Vries
Journal:  Arabidopsis Book       Date:  2002-09-30

4.  Hypothetical proteins present during recovery phase of radiation resistant bacterium Deinococcus radiodurans are under purifying selection.

Authors:  Anubrata D Das; Hari S Misra
Journal:  J Mol Evol       Date:  2013-08-10       Impact factor: 2.395

5.  Backbone makes a significant contribution to the electrostatics of alpha/beta-barrel proteins.

Authors:  S Raychaudhuri; F Younas; P A Karplus; C H Faerman; D R Ripoll
Journal:  Protein Sci       Date:  1997-09       Impact factor: 6.725

6.  Narbonin, a novel 2S protein from Vicia narbonensis L. seeds: cDNA, gene structure and developmentally regulated formation.

Authors:  V H Nong; B Schlesier; R Bassüner; A Repik; C Horstmann; K Müntz
Journal:  Plant Mol Biol       Date:  1995-04       Impact factor: 4.076

7.  Comparison of conformational characteristics in structurally similar protein pairs.

Authors:  T P Flores; C A Orengo; D S Moss; J M Thornton
Journal:  Protein Sci       Date:  1993-11       Impact factor: 6.725

8.  Genome-wide identification, expression and chromosomal location of the genes encoding chitinolytic enzymes in Zea mays.

Authors:  Michal Shoresh; Gary E Harman
Journal:  Mol Genet Genomics       Date:  2008-06-17       Impact factor: 3.291

9.  Divergent evolution of a beta/alpha-barrel subclass: detection of numerous phosphate-binding sites by motif search.

Authors:  P Bork; J Gellerich; H Groth; R Hooft; F Martin
Journal:  Protein Sci       Date:  1995-02       Impact factor: 6.725

10.  The broad bean gene VfNOD32 encodes a nodulin with sequence similarities to chitinases that is homologous to (alpha/beta)8-barrel-type seed proteins.

Authors:  A M Perlick; M Frühling; G Schröder; S C Frosch; A Pühler
Journal:  Plant Physiol       Date:  1996-01       Impact factor: 8.340

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