| Literature DB >> 16277672 |
Philippe Dieudé1, Sophie Garnier, Laëtitia Michou, Elisabeth Petit-Teixeira, Elodie Glikmans, Céline Pierlot, Sandra Lasbleiz, Thomas Bardin, Bernard Prum, François Cornélis.
Abstract
The protein tyrosine phosphatase nonreceptor type 22 (PTPN22) gene encodes for lymphoid tyrosine phosphatase LYP, involved in the negative regulation of early T-cell activation. An association has recently been reported between the PTPN22-620W functional allele and rheumatoid factor-positive (RF+) rheumatoid arthritis (RA), among other autoimmune diseases. Expected linkage proof for consistency cannot be definitely produced by an affected sib-pair (ASP) analysis. Our aim was therefore to search for linkage evidence with the transmission disequilibrium test. DNA from the French Caucasian population was available for two samples of 100 families with one RA patient and both parents, and for 88 RA index cases from RA ASP families. Genotyping was carried out by PCR-restriction fragment length polymorphism. The analysis was performed using the transmission disequilibrium test, genotype relative risk and ASP-based analysis. The transmission disequilibrium test of the PTPN22-620W allele revealed linkage and association for RF+ RA (61% of transmission, P = 0.037). The genotype relative risk showed the risk allele in 34% of RF+ RA patients and in 24% of controls derived from nontransmitted parental chromosomes (P = 0.047, odds ratio = 1.69, 95% confidence interval = 1.03-2.78). The ASP investigation showed no enriched risk allele in RA multiplex families, resulting in a lack of power of ASP analysis, explaining the published negative results. This study is the first to show linkage of PTPN22 to RF+ RA, consistent with PTPN22 as a new RA gene.Entities:
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Year: 2005 PMID: 16277672 PMCID: PMC1297567 DOI: 10.1186/ar1812
Source DB: PubMed Journal: Arthritis Res Ther ISSN: 1478-6354 Impact factor: 5.156
Characteristics of rheumatoid arthritis (RA) index cases from the investigated samples
| TDT RA sample 1 ( | TDT RA sample 2 ( | ASP RA sample ( | |
| Female (%) | 87 | 90 | 84 |
| Mean age (± standard deviation) at disease onset (years) | 32 (± 10) | 31 (± 6) | 40 (± 14) |
| Mean (± standard deviation) disease duration (years) | 18 (± 7) | 16 (± 8) | 23 (± 10) |
| RA patients with bone erosions (%) | 90 | 79 | 80 |
| RA patients seropositive for rheumatoid factor (%) | 81 | 76 | 84 |
| RA patients carrying at least one | 78 | 80 | 77 |
TDT, transmission disequilibrium test; ASP, affected sib-pair
aDRB1*0101, DRB1*0102, DRB1*0401, DRB1*0404, DRB1*0405, DRB1*0408, DRB1*1001.
Linkage analysis of the PTPN22-1858T allele to rheumatoid factor-seropositive (RF+) rheumatoid arthritis (RA) using the transmission disequilibrium test (TDT)
| Families | Transmission [% ( | |
| TDT RA sample 1 | ||
| TDT RA index cases ( | 66 (55) | 0.022 |
| TDT RA index cases RF+ ( | 66 (47) | 0.029 |
| TDT RA index cases RF- ( | 63 (8) | 0.48 |
| TDT RA sample 2 | ||
| TDT RA index cases ( | 53 (57) | 0.69 |
| TDT RA index cases RF+ ( | 56 (43) | 0.45 |
| TDT RA index cases RF- ( | 43 (14) | 0.59 |
| All TDT RA families | ||
| All TDT RA index cases ( | 59 (112) | 0.059 |
| All TDT RA index cases RF+ ( | 61 (90) | 0.037 |
| All TDT RA index cases RF- ( | 50 (22) | 1 |
RF-, seronegative for rheumatoid factor. Transmission, percentage of heterozygous 1858C/T parents transmitting the 1858T allele. The plan was to test the hypothesis for RF+ RA; analysis for all RA and RF- RA were provided for the discussion.
Association of PTPN22 genotypes carrying the 1858T allele and rheumatoid factor-seropositive (RF+) rheumatoid arthritis (RA)
| Odds ratio (95% confidence interval) | ||||||
| TDT RA sample 1 | ||||||
| All TDT RA index cases ( | 65 (65) | 31 (31) | 4 (4) | 35 (35) | ||
| Controlsb ( | 79 (79) | 20 (20) | 1 (1) | 21 (21) | 0.029 | 2.05 (1.07–3.81) |
| TDT RA index cases RF+ ( | 64 (52) | 31 (25) | 5 (4) | 36 (29) | ||
| Controlsb ( | 79 (64) | 20 (16) | 1 (1) | 21 (17) | 0.038 | 2.1 (1.04–4.24) |
| TDT RA index cases RF- ( | 68 (13) | 32 (6) | 0 | 32 (6) | ||
| Controlsb ( | 79 (15) | 21 (4) | 0 | 21 (4) | 0.71 | |
| TDT RA sample 2 | ||||||
| All TDT RA index cases ( | 69 (69) | 27 (27) | 4 (4) | 31 (31) | 0.76 | |
| Controlsb ( | 71 (71) | 26 (26) | 3 (3) | 29 (29) | ||
| TDT RA index cases RF+ ( | 68 (52) | 28 (21) | 4 (3) | 32 (24) | ||
| Controlsb ( | 74 (56) | 24 (18) | 2 (2) | 26 (20) | 0.47 | |
| TDT RA index cases RF- ( | 71 (17) | 25 (6) | 4 (1) | 29 (7) | ||
| Controlsb ( | 63 (15) | 33 (8) | 4 (1) | 37 (9) | 0.76 | |
| All TDT RA families | ||||||
| All TDT RA index cases ( | 67 (134) | 29 (58) | 4 (8) | 33 (66) | ||
| Controlsb ( | 75 (150) | 23 (46) | 2 (4) | 25 (50) | 0.078 | |
| TDT RA index cases RF+ ( | 66 (104) | 29 (46) | 5 (7) | 34 (53) | ||
| Controlsb ( | 76 (120) | 22 (34) | 2 (3) | 24 (37) | 0.047 | 1.69 (1.03–2.78) |
| TDT RA index cases RF- ( | 70 (30) | 28 (12) | 2 (1) | 30 (13) | ||
| Controlsb ( | 70 (30) | 28 (12) | 2 (1) | 30 (13) | 1 | |
RF-, seronegative for rheumatoid factor.
aFollowing data previously reported in RA and because of the infrequency of the PTPN22-1858T/T genotype, it was combined with the 1858C/T genotype for the analysis.
bControls derived from nontransmitted parental chromosomes.
PTPN22-1858 C/T genotypes distribution according to the HLA-DRB1 shared epitope (SE)
| TDT RA sample 1 | 0.88 | ||
| | 10 | 16 | |
| | 18 | 34 | |
| | 7 | 15 | |
| TDT RA sample 2 | 0.16 | ||
| | 13 | 17 | |
| | 14 | 35 | |
| | 4 | 17 | |
| All TDT RA families | 0.25 | ||
| | 23 | 33 | |
| | 32 | 69 | |
| | 11 | 32 |
HLA-DRB1*SE/SE, two shared epitopes; HLA-DRB1*SE/X, one shared epitope; HLA-DRB1*X/X, zero shared epitope.
PTPN22-1858C/T genotypes frequencies in the affected sib-pair (ASP) rheumatoid arthritis (RA) sample
| ASP RA index cases RF+ ( | 66 (49) | 31 (23) | 3 (2) | 34 (25) | 0.15 |
| ASP RA index cases RF+ and IBD1 or IBD2 at the | 71 (30) | 26 (11) | 3 (1) | 29 (12) | 0.63 |
| All ASP RA index cases ( | 69 (61) | 29 (25) | 2 (2) | 31 (27) | 0.32 |
RF+, seropositive for rheumatoid factor; IBD1 or IBD2, index sharing 1 or 2 identical by descent allele with the RA sib.
aFollowing data previously reported in RA and because of the infrequency of the PTPN22-1858T/T genotype, it was combined with the 1858C/T genotype for the analysis.
bControls derived from all non transmitted parental chromosomes.