Literature DB >> 16267129

Computational docking and solution x-ray scattering predict a membrane-interacting role for the histone domain of the Ras activator son of sevenless.

Holger Sondermann1, Bhushan Nagar, Dafna Bar-Sagi, John Kuriyan.   

Abstract

The Ras-specific nucleotide exchange factor son of sevenless (SOS) is a large, multidomain protein with complex regulation, including a Ras-dependent allosteric mechanism. The N-terminal segment of SOS, the histone domain, contains two histone folds, which is highly unusual for a cytoplasmic protein. Using a combination of computational docking, small-angle x-ray scattering, mutagenesis, and calorimetry, we show that the histone domain folds into the rest of SOS and docks onto a helical linker that connects the pleckstrin-homology (PH) and Dbl-homology (DH) domains of SOS to the catalytic domain. In this model, a positively charged surface region on the histone domain is positioned so as to provide a fourth potential anchorage site on the membrane for SOS in addition to the PH domain, the allosteric Ras molecule, and the C-terminal adapter-binding site. The histone domain in SOS interacts with the helical linker, using a region of the surface that in nucleosomes is involved in histone tetramerization. Adjacent surface elements on the histone domain that correspond to the DNA-binding surface of nucleosomes form the predicted interaction site with the membrane. The orientation and position of the histone domain in the SOS model implicates it as a potential mediator of membrane-dependent activation signals.

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Year:  2005        PMID: 16267129      PMCID: PMC1276615          DOI: 10.1073/pnas.0508315102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  25 in total

Review 1.  Autoinhibition of Sos by intramolecular interactions.

Authors:  Brian E Hall; Shao-Song Yang; Dafna Bar-Sagi
Journal:  Front Biosci       Date:  2002-01-01

2.  Structural evidence for feedback activation by Ras.GTP of the Ras-specific nucleotide exchange factor SOS.

Authors:  S Mariana Margarit; Holger Sondermann; Brian E Hall; Bhushan Nagar; Andre Hoelz; Michelle Pirruccello; Dafna Bar-Sagi; John Kuriyan
Journal:  Cell       Date:  2003-03-07       Impact factor: 41.582

3.  ClusPro: an automated docking and discrimination method for the prediction of protein complexes.

Authors:  Stephen R Comeau; David W Gatchell; Sandor Vajda; Carlos J Camacho
Journal:  Bioinformatics       Date:  2004-01-01       Impact factor: 6.937

Review 4.  Small-angle scattering: a view on the properties, structures and structural changes of biological macromolecules in solution.

Authors:  Michel H Koch; Patrice Vachette; Dmitri I Svergun
Journal:  Q Rev Biophys       Date:  2003-05       Impact factor: 5.318

Review 5.  RAS and RHO GTPases in G1-phase cell-cycle regulation.

Authors:  Mathew L Coleman; Christopher J Marshall; Michael F Olson
Journal:  Nat Rev Mol Cell Biol       Date:  2004-05       Impact factor: 94.444

6.  Structural basis for discrimination of 3-phosphoinositides by pleckstrin homology domains.

Authors:  K M Ferguson; J M Kavran; V G Sankaran; E Fournier; S J Isakoff; E Y Skolnik; M A Lemmon
Journal:  Mol Cell       Date:  2000-08       Impact factor: 17.970

Review 7.  The guanine nucleotide-binding switch in three dimensions.

Authors:  I R Vetter; A Wittinghofer
Journal:  Science       Date:  2001-11-09       Impact factor: 47.728

8.  Conformational changes of p97 during nucleotide hydrolysis determined by small-angle X-Ray scattering.

Authors:  Jason M Davies; Hirotsugu Tsuruta; Andrew P May; William I Weis
Journal:  Structure       Date:  2005-02       Impact factor: 5.006

9.  HSos1 contains a new amino-terminal regulatory motif with specific binding affinity for its pleckstrin homology domain.

Authors:  Rocío Jorge; Natasha Zarich; José Luis Oliva; Marta Azañedo; Natalia Martínez; Xavier de la Cruz; José M Rojas
Journal:  J Biol Chem       Date:  2002-09-09       Impact factor: 5.157

10.  Tandem histone folds in the structure of the N-terminal segment of the ras activator Son of Sevenless.

Authors:  Holger Sondermann; Stephen M Soisson; Dafna Bar-Sagi; John Kuriyan
Journal:  Structure       Date:  2003-12       Impact factor: 5.006

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  26 in total

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2.  Noonan syndrome: clinical aspects and molecular pathogenesis.

Authors:  M Tartaglia; G Zampino; B D Gelb
Journal:  Mol Syndromol       Date:  2010-01-15

3.  PTPN11, SOS1, KRAS, and RAF1 gene analysis, and genotype-phenotype correlation in Korean patients with Noonan syndrome.

Authors:  Jung Min Ko; Jae-Min Kim; Gu-Hwan Kim; Han-Wook Yoo
Journal:  J Hum Genet       Date:  2008-11-20       Impact factor: 3.172

4.  Integration of small-angle X-ray scattering data into structural modeling of proteins and their assemblies.

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5.  pyDockSAXS: protein-protein complex structure by SAXS and computational docking.

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Journal:  Nucleic Acids Res       Date:  2015-04-20       Impact factor: 16.971

6.  The ClusPro web server for protein-protein docking.

Authors:  Dima Kozakov; David R Hall; Bing Xia; Kathryn A Porter; Dzmitry Padhorny; Christine Yueh; Dmitri Beglov; Sandor Vajda
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7.  Molecular dynamics reveal the essential role of linker motions in the function of cullin-RING E3 ligases.

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Journal:  J Mol Biol       Date:  2010-01-18       Impact factor: 5.469

8.  Outcome of a workshop on applications of protein models in biomedical research.

Authors:  Torsten Schwede; Andrej Sali; Barry Honig; Michael Levitt; Helen M Berman; David Jones; Steven E Brenner; Stephen K Burley; Rhiju Das; Nikolay V Dokholyan; Roland L Dunbrack; Krzysztof Fidelis; Andras Fiser; Adam Godzik; Yuanpeng Janet Huang; Christine Humblet; Matthew P Jacobson; Andrzej Joachimiak; Stanley R Krystek; Tanja Kortemme; Andriy Kryshtafovych; Gaetano T Montelione; John Moult; Diana Murray; Roberto Sanchez; Tobin R Sosnick; Daron M Standley; Terry Stouch; Sandor Vajda; Max Vasquez; John D Westbrook; Ian A Wilson
Journal:  Structure       Date:  2009-02-13       Impact factor: 5.006

9.  Mutation of Glu-166 blocks the substrate-induced dimerization of SARS coronavirus main protease.

Authors:  Shu-Chun Cheng; Gu-Gang Chang; Chi-Yuan Chou
Journal:  Biophys J       Date:  2010-04-07       Impact factor: 4.033

10.  Regulation of Son of sevenless by the membrane-actin linker protein ezrin.

Authors:  Katja J Geissler; M Juliane Jung; Lars Björn Riecken; Tobias Sperka; Yan Cui; Stephan Schacke; Ulrike Merkel; Robby Markwart; Ignacio Rubio; Manuel E Than; Constanze Breithaupt; Sebastian Peuker; Reinhard Seifert; Ulrich Benjamin Kaupp; Peter Herrlich; Helen Morrison
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-02       Impact factor: 11.205

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